Gossypium hirsutum (upland cotton): 107950173
Help
Entry
107950173 CDS
T04793
Name
(RefSeq) U-box domain-containing protein 13-like isoform X1
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
107950173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107950173
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107950173
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
U-box type E3
107950173
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
zf-RING_UBOX
Neurochondrin
HEAT_2
MLKL_N
zf-Nse
zf-C3HC4_4
Arm_2
KAP
zf-C3HC4_2
HEAT_EZ
zf-C3HC4
DUF6746
zf-RING_2
zf-rbx1
MCAfunc
Motif
Other DBs
NCBI-GeneID:
107950173
NCBI-ProteinID:
XP_016740450
UniProt:
A0A1U8NNM2
LinkDB
All DBs
Position
D03:47329722..47334070
Genome browser
AA seq
660 aa
AA seq
DB search
MEEEKGALVQGLIEAVNQIASIGDYSCAVKKEYCNLARRLKLLTPMFEEIREIKEQIPEE
TVKALVSLKEALVSAKELLIFGSEGSKIYLVLERKQIMHKFHEVTARLEQALSRISHENL
DILEEVKEQVELVLAQFRRAKGRVDVPDVELYEDLLSLYNKNNDAEADPEVLRRLAEKLQ
LVGIAELMQESLALHEMVSASGGDPGAIFEKMSNLLKEIKDFVQTENPNLDAPAREKNLP
PSSSSAQTTAVGNHKAPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEQGHRTC
PKTQQTLSNPALTPNYVLRSLIAQWCETNGIDPPKRPSSSQPSKTKFACSPAELTKIQIL
LCKLSSSNPEDQRTAAGEIRLLAKRNADNRVAIAEAGAIPLLVKILSTPDSRTQEHAVTA
LLNLSICEDNKGSIISSGAVPGIVQVLKKGSMEARENAAATLFSLSVVDENKVAIGASGA
IPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKTVRAGVIPTLMRLLTEPGGGMVDEA
LAILAILASHPEAKSAIGAAKAMPVLVDFIGNGLPRNKENAAAVLVHLCAGDQQHLADAE
ELGVMGHLVDLAQNGTDRGKRKAAQLLQRLSRFVEQQKRSQSQAEAQAEQSLSQSRAQQP
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagagaaaggagctctggtgcagggcttgatcgaagcggtgaaccaaatagct
tcgatcggcgactacagttgcgccgtgaagaaggagtattgcaacctcgctaggagactg
aagctgttgacgccaatgttcgaggagattagagaaatcaaagagcaaatccctgaagaa
acggttaaagctttggtatcgttgaaagaagctctggtttcggctaaggagttgcttata
ttcggaagtgaaggcagcaagatttacctggttctagagaggaagcagattatgcataaa
tttcatgaagtgacagctcgattggagcaggctttgagtagaatttcccatgagaatctt
gacatcctagaagaagttaaggaacaggttgagcttgttctagctcagttcaggagagct
aaagggagggttgatgtacctgatgttgagctgtatgaggatctattgtcactctacaac
aagaacaatgatgcagaagcagatcctgaggtactaaggagattggctgagaagttacag
ttggtgggaatagctgaacttatgcaagaatctctagctctacatgagatggtttctgcc
agtggtggagatcccggggcaatatttgagaagatgtcaaacttattgaaggaaatcaag
gattttgtacagacggaaaatcctaacttggatgctcctgcaagagaaaagaatcttcct
cctagtagcagcagtgcgcaaacaaccgctgttggaaatcacaaggccccagttatacca
gatgatttccgctgtccaatatcccttgagctgatgaaagatcccgtcattgtttcaaca
gggcagacttatgaacgatcttgcattgagaaatggctggagcaagggcatcgaacatgt
ccgaagacacaacagactcttagtaaccctgctcttactcccaattatgtattgcgtagt
ttaatagctcaatggtgcgagacaaatggcattgacccacccaaaaggccgagtagttct
cagcccagtaaaaccaaatttgcctgctcacctgctgaacttaccaagattcaaattctc
ctctgtaagctctcatccagcaatcctgaagaccaaagaacggctgcaggtgaaatccgt
ctccttgctaaacgcaatgcagataaccgtgtagccattgctgaagcgggggctatacct
ctccttgtaaaaatcctttcaacacctgactcacgcacccaagaacatgctgtaacagca
cttcttaacctttctatttgtgaagataacaaaggaagtatcatatcctccggtgcagtt
cctggtattgtccaggtgcttaagaaggggagcatggaagctagagaaaatgcagcagct
accctcttcagcctttcggtagtggatgaaaataaggtggcaattggcgcctcgggagca
atccctccactagtgacactgctaagtgaaggcacacaaaggggcaaaaaggatgcagca
acagcactcttcaacttgtgcatttaccaagggaacaaaggaaaaactgtgagagctgga
gttatacctacgttaatgcgtttgctgacagaacctggaggcggaatggtggatgaggca
ttggccatacttgcaattcttgctagccatcctgaagcaaagtctgccattggagcagca
aaggctatgccagttttggtagattttattggaaatggattgccgaggaacaaagagaat
gcggctgctgttttggtgcacctttgtgccggagaccaacaacatctagcagacgccgag
gaactaggcgtgatgggtcatttggtggacttggcacaaaatggtacggataggggcaag
cggaaagctgctcaactgctccaacgcttaagcagatttgttgagcagcaaaagcggtca
cagtcccaagctgaggcccaagcagagcagtccctatctcagtctcgtgctcagcagcca
tga
DBGET
integrated database retrieval system
