Gossypium hirsutum (upland cotton): 107950386
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Entry
107950386 CDS
T04793
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107950386
09122 Translation
03013 Nucleocytoplasmic transport
107950386
03015 mRNA surveillance pathway
107950386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107950386
03041 Spliceosome [BR:
ghi03041
]
107950386
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107950386
Spliceosome [BR:
ghi03041
]
Complex C
Other components
EJC/TREX
107950386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
107950386
NCBI-ProteinID:
XP_016740723
UniProt:
A0A1U8NRM6
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Position
D03:6289554..6293977
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AA seq
706 aa
AA seq
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MSSKYQILDNRPIDQWKVTELKEELKRRKLTTRGLKEELVRRLDEAVRLERENGETEEDN
GFNSDPQPTDERGIEKAIPVIVETVKDDVDHSGREIEKESGVKVHVDINESAAALGHEGV
QGSDSLVEKELVSETTTIQTEITVTKNVVSEVPSTEKESSGQNENVNTDIKVEGKDPKLQ
FETDDPKPEVENDDPKGKLQGSNPQLESDDSKPQLDIEDSKVQLENGGLKVPHEDDVHDS
SAPNIQVSEVSPDLGLQVKSDSISTDSVSNNEKIELKDNILADNVKLDLDVVKPEMVEPS
SSNVVPISGESHPMDVEDPPENKAPVDERDGKNVTNVDLGNKNDSAEMTYSEKLNLDRSS
GDDSMEEDMLESKQIDSKCSTDEMGDKSENNGAPIIKEKIPLGDVRDDLSVNKKDTLVEN
KSRSFVPAEKRKLHDQEPVGNNELAKRRKWNSDNIEVPEHQGSNLTPISTPKDTPQPAAL
RRNFSRSDSTASEGAPKERVVPPSQNAPTTSLRIDHFLRPFTLKAAQELLGKTGTVTSFW
MDHIKTHCYVTYSSVEEAIETRNAVYNLQWPPNGGRLLVADFVDPQEVKTRLDAPPRTPT
TPGTSGSTAPQAQPASQPQPSSRQQVSRQQFPPPFALPPPPPLPNPPPVRERLPLPPPPP
EKPDPPIVTLDDLFWKTKATPRIYYLPLSDEQVAAKQAAHGRNIKL
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaaaatatcaaatacttgacaatagaccaattgatcaatggaaggttacagag
ttgaaagaagaacttaagaggcggaaactgacaactcggggcttgaaagaggagttggta
agacgtttggatgaggccgttagattggaaagggaaaatggtgaaactgaggaagataat
ggttttaattctgatccccagcctacagatgagcgagggattgaaaaggcaattccagtt
attgttgagacagttaaagatgatgtggatcatagtggccgtgagatcgagaaggagagt
ggggtgaaggttcatgttgacattaatgagagtgcagctgctttgggtcatgaaggagtt
caaggaagcgacagcttggtggaaaaggagcttgtttctgaaaccaccactattcagact
gagataacggttaccaagaatgtggtatctgaggtaccatctactgagaaagagagctca
gggcaaaatgagaatgtgaatactgatatcaaagtggagggtaaggatcctaagctccag
ttcgagactgatgatccaaagcctgaggtggagaatgatgatccaaagggcaaactgcag
ggttcaaatcctcagctggagagtgatgattcaaagcctcagcttgacattgaagattcg
aaggtgcagctggagaacgggggtttgaaggttccacacgaggatgatgtgcatgattct
tctgctccgaacatccaggtatctgaggtcagccctgatttagggttgcaagtaaaatct
gattctatatctactgattctgtctcaaataatgaaaagattgaattaaaggataatata
cttgctgataatgtcaaattagacttagatgttgtaaagccagagatggtggaaccatca
tccagtaatgttgtcccaattagtggtgaatcacatccaatggatgttgaagatccacct
gagaacaaggcacctgttgatgagagagatggcaagaatgtcacaaatgtagacttgggt
aataaaaatgacagtgctgagatgacctactcggaaaaattaaatttggatagaagttct
ggtgatgactctatggaggaggatatgcttgagagtaaacaaattgattcaaaatgtagt
actgatgaaatgggagataagagtgagaataatggagcacctattatcaaggagaaaatt
cctcttggtgatgtaagagatgatttatctgttaataaaaaggacaccttggttgagaat
aagagccgatcttttgttcctgctgagaaaagaaagcttcatgatcaggaacctgttggt
aacaatgagcttgcaaaacggcgcaaatggaattctgacaatatagaagttccagaacat
caaggctctaatcttacacccatcagcacacctaaagacacccctcagcctgctgctttg
agacgtaacttctctagatcagactcaacagcaagtgaaggtgcaccaaaggaacgagtt
gttcccccttctcaaaatgctcctaccacatccctcagaattgatcattttcttcgccct
tttaccttgaaagctgcacaagaacttctagggaaaactgggactgtaactagcttctgg
atggaccacattaagacccattgctatgttacatattcatctgtagaagaagcaatagag
acacgaaatgctgtttataacctgcaatggccacctaatggtgggcgtctattggtggct
gactttgttgatccccaggaagttaaaactcggcttgatgctccaccacggactccaact
actcctgggacttctggttctactgctcctcaagctcaacctgcttctcagccccagccc
tcttcgcgtcagcaggtttctaggcagcagtttccaccaccttttgcacttcctccacca
ccgcctttgcctaaccctccaccagttagagaacgtctccctcttccgccgccacctcca
gagaaaccagatcctcctattgtcactctggatgatctattttggaaaaccaaagcaact
cctcggatctactatttgcctttgtcagatgagcaagttgcagccaagcaagcagcacat
ggcagaaacatcaagctgtag
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