Gossypium hirsutum (upland cotton): 107950557
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Entry
107950557 CDS
T04793
Name
(RefSeq) exosome complex component RRP45A isoform X1
KO
K03678
exosome complex component RRP45
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107950557
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107950557
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107950557
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
tRNA_synt_1c_R2
Motif
Other DBs
NCBI-GeneID:
107950557
NCBI-ProteinID:
XP_016740926
UniProt:
A0A1U8NPK5
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All DBs
Position
D03:complement(8362778..8369936)
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AA seq
450 aa
AA seq
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MDARLANTWRLTLNEKNFIKTALLSEIRIDGRKPFEFRNISINFGREDGSAEVQLGQTRV
MGIVTAKFVQPYRDRPNEGTLAIYPEFSPMADPSFEAGRSGESAVELGRIIDRGLRESRA
VDTESLCIVAGKLVWAIRIDILILDNGGNLVDAANIAALAALMTFRRPECSLGGEDGLEV
IIHPPEMRDPLPLIVHHLPIAITFGFFIDENVVVIDPILNEEAVMAGRMIATVNANGDIC
AIQKAGEGVSQRVIMQCLQLAITKAADITKQIKAAVEAYNSERALQKIKRETTCVGNNVK
GDQNQTLDNKGISELVGKYMERLKLISVESYASQNISAEETKSLRRGTDSNCIKFNSTPL
SWDPYSKCVDLEFLKASVALQGLSTASEEKEATGKEKGSEAESAGPYEDVNSKWSAVDAS
TTEMHVIGPKTLKDAVKPKNKGKKKASSVI
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggatgctagactggccaacacctggcgcttgacattgaatgagaagaattttatcaaa
acagctttactttctgaaataagaatagatggtcgaaaaccctttgaatttcgtaatatc
agcatcaattttggcagagaagatgggtctgcagaggtgcagttgggccagactcgtgtt
atgggcattgtgacagctaaatttgttcagccttatcgagacaggcctaatgaaggaact
cttgcaatctacccagaattttcgcctatggctgatccctcatttgaggcaggccgttct
ggagaatctgctgttgagttgggacggataatagatcgtggtctaagagaaagtagggct
gtagatactgaatcactttgtattgttgctggcaagttagtgtgggccatccgtattgat
atcctcatcctagataacgggggtaacctagttgatgcagctaatattgctgctttggct
gctcttatgacctttcggagacctgaatgctcactaggaggagaagatggtctggaagta
ataatacatccacctgagatgagagatccacttcctttgatagtgcatcatcttcctata
gcgattacttttggattttttattgatgagaatgttgtggtgatagatcccatcctcaat
gaggaggctgttatggctggaagaatgattgctaccgttaatgcaaatggtgatatttgc
gcgattcaaaaagctggagaaggtgtcagtcaaagagttatcatgcaatgtttgcaactt
gctattacaaaagctgcagatataacaaaacagataaaagcagcagttgaagcatacaac
tcagaaagagctctacaaaagatcaagcgtgaaactacttgtgttggtaataatgtaaaa
ggggaccaaaaccaaactcttgataataagggcattagtgagttggtgggtaaatatatg
gagaggttaaaactcatatcagttgaaagctatgcaagtcaaaatattagtgctgaggaa
accaaatcattgagaagagggacggacagcaattgtatcaaatttaacagcacccccttg
agttgggatccctactcaaagtgtgttgatctggaatttctgaaagcttcagtcgctttg
caaggtttgtcaactgcaagtgaggaaaaggaggcaactggcaaggaaaagggtagtgaa
gctgaaagtgcaggcccttatgaagacgttaattcaaagtggtcagctgttgatgcatct
acaactgaaatgcacgtcatagggccgaaaacattgaaagatgctgtaaaacctaagaac
aaggggaaaaagaaggcttcctccgtgatttaa
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