Gossypium hirsutum (upland cotton): 107950907
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Entry
107950907 CDS
T04793
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
107950907
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
107950907
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
RhgB_N
Motif
Other DBs
NCBI-GeneID:
107950907
NCBI-ProteinID:
XP_016741307
UniProt:
A0A1U8NQP4
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Position
D03:3939745..3944610
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AA seq
679 aa
AA seq
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MEKVVNMSHWRSKLVLWMIMVIQLSLFLSVFSTEIHARKLLKDNHINTNDVRLHISDRQV
IIDNGLVEVTIENPSGYLIGIKYKEMENVLERRNHNSNRGYWDIVWDDDAYDKLETKHVE
VITQTNDIVELSFTKTWNSKNHGKTLPLNIQKRYIVRRGISGVYMYGIFERQEDFPEAHM
YQIRIAFKLKEDKFRFMAISDTIQRVMPQSEDRVKGHSKPLDFKEAVLLTNPSNPKLKGE
VDDKYQYSTENKDNKLNGWISDHDAVGFWIMTPSNEFRTGGPHKQDLTSHVGPTALSMFV
STHYTGTEIDTFYKEGEAWKKVFGPVLIYLNSASSKDDDHRKILWNDAKRQLSEEIESWP
YNFTRSEDFPHSQQRGQVNGQLLVQDRYMDKQLMQAKSAFVGLAPPGEVDSWQKEGKGYQ
FWTQTDKIGRFNIKNVRPGVYNLYAWVHGFIGSYKLDLNITIQPGNKIELGTLIYDPPRN
GPTLWEIGIPDRTAAEFFIPEPYPQYVNSITNDGADKFRQYGLWDRFSNIYRDSDLVYTV
GASNYSKDWFFAHVPRKTGDDRYRPTTWQIKYNLQDVNNRGTYTLQMAIAAASFAEVEVR
FNDPNSDRPHFTTRRIGYDNAVPRHGIHGLYRLYSIEVPGYRFRKGNNTIYLTQTRSDNP
FEAVMYDYIRLEGPNSLND
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atggagaaggtggtaaacatgagccattggagaagtaagcttgttttgtggatgataatg
gtgattcaattatcactgtttctctctgttttctctactgaaatccatgccagaaaactc
ctaaaggacaaccacattaacactaatgatgtccggttacacataagtgaccgccaagtg
attattgataatggacttgttgaagtcactatcgagaatccatctggttacttgatagga
attaaatataaagagatggaaaatgtacttgaaaggagaaatcataattccaatagaggg
tactgggacattgtgtgggatgatgatgcctatgataaactggaaaccaaacacgtcgag
gtcataacacaaactaatgacattgtagagctttcctttaccaaaacatggaattctaaa
aaccatggaaagacacttcccctgaacatacaaaaaaggtacatagtccggcgcggcatc
tcgggggtctacatgtacggcattttcgagcgccaggaagattttccggaagctcatatg
taccaaataaggattgctttcaagctcaaggaagacaagttccggttcatggcgatatcg
gacacgatacaacgggtcatgcctcaaagtgaagatcgggtcaaaggtcatagtaagcct
cttgacttcaaagaagctgttttactgacaaatccatcaaatccaaaacttaaaggagag
gttgacgataagtaccaatattctactgagaataaagataataaacttaacggttggata
tcggaccacgatgccgtcggtttttggataatgacccctagtaatgagtttcgaaccggc
ggtccgcataaacaggaccttacttctcatgtcggtccgactgccctttcgatgtttgtt
agtacgcattataccggaaccgaaatcgacacattctataaggaaggagaggcttggaaa
aaagtttttggtccggttttgatctatcttaattctgcttcttcaaaggacgatgatcac
cgcaagatcctgtggaatgatgctaaaagacagttgagtgaagaaatagaaagttggcct
tacaattttacccgatcagaagattttcctcactctcaacaacgaggacaagttaatgga
caactgctagtgcaagaccggtacatggataagcaattaatgcaggcaaaatctgccttt
gtggggttggccccccctggagaggttgattcatggcaaaaagaaggaaagggctaccaa
ttttggactcaaaccgacaagattggtcgtttcaacataaaaaatgtccgaccaggggtg
tataatttgtatgcttgggtccatggtttcattggaagctacaaattagatctcaatatc
actatccaaccaggaaataagatcgaattgggtacacttatatatgatccaccaagaaat
ggaccgacattgtgggaaattgggattccagacaggacagcggccgagttcttcatacct
gaaccatacccacaatatgtcaattcaatcaccaatgatggtgcagacaaattcaggcaa
tatggattgtgggatcgattctcgaatatttatcgtgatagtgaccttgtctacactgtg
ggtgcaagcaactattcaaaggattggttctttgctcatgttccaaggaaaaccggggac
gataggtaccgaccaacaacatggcagatcaaatacaatctccaagatgtaaacaataga
ggaacctacactctccaaatggcaatagcagcagcttcttttgcagaagtagaggttcga
ttcaacgatccaaattccgatcgacctcattttacaaccagaagaatcggttacgacaac
gccgtaccaaggcacgggattcacggattgtacagattgtatagcattgaagtacctgga
tatagatttcgtaaagggaacaacacaatatatctaactcagacaagaagtgacaaccct
tttgaagctgtaatgtatgattacattcgattagaagggcctaatagtttaaacgattag
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