Gossypium hirsutum (upland cotton): 107951090
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Entry
107951090 CDS
T04793
Name
(RefSeq) sm-like protein LSM1B isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107951090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107951090
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107951090
mRNA degradation factors
5'-3' decay
Lsm complex
107951090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
107951090
NCBI-ProteinID:
XP_016741491
UniProt:
A0A1U8NR80
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Position
A06:21111522..21113965
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AA seq
163 aa
AA seq
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MISFSPPLLPPILTRNSLSCSEMAESFWDYCVLLINLVACPDLIPFDKFLSAFFVSFTFS
FFLFLPIIICDVYPSIFTANVVLEGACERVIVGDLYCDIPLGLYVIRGENVVIIGELDLE
KEELPSRMNPVSEDEIKRAQKAEREATDLKGSMRKRMEFLDFD
NT seq
492 nt
NT seq
+upstream
nt +downstream
nt
atgatatctttctctccacctctcttgccacctatcttgacaagaaactccttgtcctgc
tcagagatggccgaaagcttttgggattattgcgttcttttgatcaatttggtagcttgt
cctgatcttattccttttgataagttcttatctgctttctttgtttcctttacattttct
ttcttcctttttcttccgattataatctgtgatgtctacccttccatatttacagctaat
gttgttctagaaggagcttgtgagcgagttatcgttggagatttgtactgtgacatcccc
ttaggtctatatgtaatccgtggggagaatgttgtcataataggagagctggacttggaa
aaggaggagcttccctcacgtatgaatcctgtatcggaagacgagattaaaagggctcag
aaagcagaacgggaagcaacagatctaaagggctccatgaggaaaagaatggagttcctt
gattttgattaa
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