KEGG   Gossypium hirsutum (upland cotton): 107951090
Entry
107951090         CDS       T04793                                 
Name
(RefSeq) sm-like protein LSM1B isoform X1
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107951090
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107951090
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107951090
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107951090
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 107951090
NCBI-ProteinID: XP_016741491
UniProt: A0A1U8NR80
LinkDB
Position
A06:21111522..21113965
AA seq 163 aa
MISFSPPLLPPILTRNSLSCSEMAESFWDYCVLLINLVACPDLIPFDKFLSAFFVSFTFS
FFLFLPIIICDVYPSIFTANVVLEGACERVIVGDLYCDIPLGLYVIRGENVVIIGELDLE
KEELPSRMNPVSEDEIKRAQKAEREATDLKGSMRKRMEFLDFD
NT seq 492 nt   +upstreamnt  +downstreamnt
atgatatctttctctccacctctcttgccacctatcttgacaagaaactccttgtcctgc
tcagagatggccgaaagcttttgggattattgcgttcttttgatcaatttggtagcttgt
cctgatcttattccttttgataagttcttatctgctttctttgtttcctttacattttct
ttcttcctttttcttccgattataatctgtgatgtctacccttccatatttacagctaat
gttgttctagaaggagcttgtgagcgagttatcgttggagatttgtactgtgacatcccc
ttaggtctatatgtaatccgtggggagaatgttgtcataataggagagctggacttggaa
aaggaggagcttccctcacgtatgaatcctgtatcggaagacgagattaaaagggctcag
aaagcagaacgggaagcaacagatctaaagggctccatgaggaaaagaatggagttcctt
gattttgattaa

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