Gossypium hirsutum (upland cotton): 107951232
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Entry
107951232 CDS
T04793
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH14 isoform X1
KO
K18663
activating signal cointegrator complex subunit 3 [EC:
5.6.2.4
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107951232
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
107951232
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
107951232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
DExH14_plug
ResIII
Helicase_C
AAA_22
DEXQc_Suv3
T2SSE
AAA_19
IstB_IS21
Tc-R-P
Motif
Other DBs
NCBI-GeneID:
107951232
NCBI-ProteinID:
XP_016741681
UniProt:
A0A1U8NRR5
LinkDB
All DBs
Position
A12:complement(98857276..98885950)
Genome browser
AA seq
2089 aa
AA seq
DB search
MLVQLPRLTNSLREPFDIDQAYLQRKIILETQKKSINSGNSLDESELARKIVHRWEEAAS
VEVRQVYKQFIGAVVELIDGDVPSEEFREVVLTAYRLFSGSVEVDEVDKNINEKTVELQK
VIGHGVSHANVRKVSSLAQKLSQSQPRDSGAILGSEKHVNGSGDDSEFGADLAFKAPARF
LVDVSLEDVELLGDESIAPSSSFIEGWHDKNGPINYHGNTDSRNFNLSWLRDSCELIVRG
STSQLSRDDLAMAICRVLDSDKPGEEIAGDLLDLVGDSAFETVQDLLSHRKELVEAIHHG
LSVLKSEKLTSSSQSRMPSYGTQVTVQTESEKQIDKLRRKEEKRNRRATEYGAENDMSAA
SFSSLLQASEKRSPFEDLSGSGQGSNSVAVTALPQGTVRKHFKGYEEVIIPPTPTAQMKP
GEKLIEIKELDDFAQAAFRGYKSLNRIQSRIFQTVYHTNENILVCAPTGAGKTNIAMISI
LHEIGQHFKDGYLHKDEFKIVYVAPMKALAAEVTSTFSQRLSPLNMCVRELTGDMQLSKN
ELEETQMIVTTPEKWDVITRKSSDMSLSMLVKLLIIDEVHLLNDDRGPVIEALVARTLRQ
VESTQSMIRIVGLSATLPNYLEVAQFLRVNAETGLFFFDSSYRPVPLAQQYIGISEQNFV
ARNELLNEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAEKLVELARKYEGLELFKNDAHP
QFSLIKKEVVKSRNKDLVQLFDFGVGVHHAGMLRSDRGLTERLFSDGILRVLVCTATLAW
GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITSHDKLA
YYLRLLTSQLPVESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLFIRMRLNPLAYG
IGWDEVVADPSLSLKQRALVTDAARALDKAKMMRFYEKSFYCTELGRIASHFYIQYSSVE
TYNEMLRRHMSDSEVIEMVAHSSEFENIVVREEEQNELEMLARTSCPLEVRGGPSNKHGK
ISILIQLYISRGSIDSFSLVSDAAYISASLARIMRALFEICLRRGWCEMTLFMLEYCKAV
DRQIWPHQHPLRQFDKDLSLEILRKLEERGADLDRLQEMEEKDIGALIRYAPGGRLVKQY
LGYFPWVQLSATVSPITRTVLKVDLLISSDFIWKDRFHGAAQRWWILVEDTENDHIYHSE
LFTLTKKMARAESQKLSFTVPIFEPHPPQYYIRAVSDSWLYAEAFYTISFQNLRLPEACT
TLTELLDLKPLPVTSLGNSTYESLYSFSHFNPIQTQIFHVLYHTDNNVLLGAPTGSGKTI
SAELAMLHLFNTQPDMKVIYIAPLKAIVRERMHDWRKRLVSQLGKEMVEMTGDYTPDLMA
LLSADIIISTPEKWDGISRNWHSRSYVTKVGLMILDEIHLLGADRGPILEVIVSRMRYIS
SQTERAVRFVGLSTALANAGDLADWLGVGEIGLFNFKQSVRPVPLEVHIQGYPGKYYCPR
MNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQYAASDENPRQFLSMPEEALQ
MVLSQVTDQNLRHTLQFGIGLHHAGLNDKDRSLVEELFSNNMIQVLVCTSTLAWGVNLPA
HLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQDGKAVILVHEPKKSFYKKFL
YEPFPVESSLREQLHDHMNAEIVSGTICHKEDAVHYLTWTYLFRRLMVNPAYYGLESGED
ETLSSYLSSLVQSTFEDLEDSGCIKMTEDSVEPMMLGTIASQYYLSYMTVSMFGSNIGPD
TSPEVFLHILSGASEYDELPVRHNEENYNEALSKRVRYMVDQNRLDDPHVKANLLFQAHF
SQLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLTSSIACMHLLQMVMQGLWFGQD
SALWMLPCMNNELAGSLCKRGISTVQQLLDLPKATLQTVIGNFPASKLYQDLQHFPCIRV
KLKLLKKGTESKKSLQLNVRLEKTNLRRNMSRAFAPRFPKIKDEAWWLILGNTSTAELYA
LKRVSFSDRLVTHMELPSDVTLIQGMKLIIVSDCYIGYEQEHSIENLAA
NT seq
6270 nt
NT seq
+upstream
nt +downstream
nt
atgttggttcagcttcctcggttgacaaattctttaagggaaccgttcgatatcgaccaa
gcttatctccagcgcaagatcatccttgaaacccagaaaaaatctatcaattcgggaaac
tcccttgatgagtcagagcttgcaaggaagatagttcatcgatgggaagaagcagcttct
gtagaagtgagacaagtatacaaacagttcattggggcagtggtggagctgattgatgga
gatgtaccttctgaagagttccgtgaggttgtgttgactgcttatcgtctttttagtggg
tcagtggaagtggatgaagttgataaaaacataaatgagaagacggtagaattgcagaaa
gttattggtcatggagtttcacatgctaatgtgcggaaggtgtcctctttggcacagaag
ctatctcagtctcaaccaagagacagtggggccatacttggttctgaaaagcatgtaaat
ggaagtggagatgattcagaatttggtgctgaccttgcctttaaagcaccagcccggttt
ttggtggatgtttctttggaggatgtggaattactgggtgatgaaagcattgcaccttct
tcttcatttattgaaggatggcatgataaaaatggccctataaattatcatggcaatact
gatagtagaaacttcaatttaagttggttaagagattcatgtgaactaattgttagaggg
agtacttcacaactttcccgagatgacctggctatggcaatctgtcgggtacttgattca
gacaaacctggtgaagagatagctggcgatttattggaccttgtcggggatagcgcattt
gaaactgttcaagaccttttatcgcatcgaaaggagcttgttgaagctattcatcatgga
ttatctgtattgaaatctgaaaaattgacttcaagttctcagtcacgcatgcccagctac
gggacccaggtgactgtccaaacagagtctgagaagcagattgataaactgcggcgcaag
gaggaaaagcgtaacagacgtgcaacggaatatggggctgagaatgatatgtcagctgca
agcttttcttctttacttcaagcgagtgagaagagaagtccgtttgaagatttgagtgga
tctggtcaagggtctaattctgtggcagtaactgcccttccacaggggactgtacggaag
cattttaaggggtatgaggaggtgattatacccccaacaccaactgctcaaatgaaacct
ggagaaaagctgattgagataaaggagttggatgacttcgctcaagctgcttttcggggt
tacaaatctctgaatcgtattcagagtcggatattccaaaccgtatatcacactaatgag
aatatattagtttgtgcaccaactggagcaggcaagacaaacatagccatgatatctatc
ctacatgagattgggcagcatttcaaggatggctacttgcataaagatgaatttaagatc
gtttatgttgctcctatgaaggcattagctgctgaggtcacatcaacatttagtcaacgc
ttatctccattgaatatgtgtgtgagagaacttactggagacatgcaactttctaagaat
gaacttgaagaaactcagatgatagttacaacacctgagaaatgggatgttattactcgc
aaaagtagtgatatgtcactctcaatgctggtgaagctcttgattattgatgaagtgcat
cttctaaatgatgatagaggtccagtaatagaagctctagtggctagaactcttcgtcag
gtggagtcgacacagtcaatgatacgaattgttggcctttcagctactctacctaattac
ttagaggttgcacagttccttagagtgaatgcagagactggcctttttttctttgattct
agttatcgtccagttccgcttgctcaacaatatattggaattagtgagcagaactttgtt
gcccgtaatgaattattgaatgagatatgctataagaaggtggttgattccttaaggcaa
ggtcaccaggcgatggtgtttgttcattcaaggaaggatactgtcaaaacagctgagaag
ctggttgagcttgctcgaaagtatgagggtcttgagcttttcaagaatgatgcccatccc
cagttctccttaatcaagaaggaagttgttaagtcaagaaacaaagatctagttcagctt
tttgatttcggagttggtgtgcatcatgctggtatgttacgttctgatagggggcttact
gagaggcttttctctgatggaatcttgagggtacttgtttgcacagctaccttggcctgg
ggtgttaatttgcctgctcacacggttgtcatcaaggggactcaattatatgatccaaag
gctggtgggtggcgagacctgggcatgctagatgttatgcagatatttggaagggcaggt
cgacctcagtttgacaaaagtggtgagggcatcataattacatctcatgacaaactagcc
tactatctgcgattgttgacaagccaacttcctgtagaaagtcagtttatcagctcgttg
aaagataatttaaatgcagaggtagcattgggtactgtaactaatgtcaaggaggcttgc
gcatggcttgggtacacctatctatttatcaggatgaggttgaacccactggcatatggc
atcggatgggatgaggttgttgcagatccttctttgagtttaaagcaaagagctctagta
acagatgctgcacgtgcactagacaaagctaaaatgatgcgtttttatgagaaaagtttc
tattgtacagagcttggtcgtattgcaagtcacttctatatccaatattctagtgttgaa
acttacaatgaaatgctcaggcgccatatgagtgacagtgaggtaattgaaatggttgcc
cattcttctgaatttgaaaacattgttgttcgagaagaggagcagaatgagctagagatg
ctggcgcgcacatcatgcccattagaagttaggggggggccttcaaacaagcatgggaaa
atttcaattctcattcagctgtacatatcacgtggctccattgattccttttcgttggta
tctgatgctgcatatataagtgctagtttggctcgcatcatgcgtgctttgtttgaaata
tgcttgcgcagaggctggtgtgagatgacattattcatgttggaatattgcaaggccgtg
gatcgccaaatttggcctcatcaacatccgctcagacaatttgataaagatctttcacta
gaaatattaaggaagcttgaagaacgaggggctgacttagatcgtcttcaggagatggaa
gaaaaagacattggtgcactgattcgttatgcacctggaggaaggttggttaagcaatat
ttaggatatttcccttgggtccagttatcagcgactgtgagtccaataactaggactgtt
ttaaaggtagatttgcttatatcttctgattttatttggaaagatcgatttcacggtgct
gcacaacgttggtggatacttgttgaggacactgagaatgatcacatctaccactctgag
ctttttacactgacaaagaagatggctagagcagaatctcagaagctttcctttaccgta
ccaatatttgaaccacatcctcctcagtactacattcgtgctgtttctgattcttggttg
tatgctgaggctttctacactatatcattccaaaatctaagactgccagaggcttgtacc
actcttacagagcttcttgatttgaagcctctgcctgtaacttcactcggcaacagcact
tatgaatcattgtatagcttttcacattttaatccgatacaaacgcagatctttcatgtc
ctgtatcacacagataacaatgttctattaggagctcctacgggtagcgggaaaactata
tcggctgaacttgctatgctgcacctcttcaatacccaacctgatatgaaggttatctac
atagcacctttgaaggccattgtacgggaaaggatgcatgattggaggaagcgtcttgtc
tctcagcttgggaaagaaatggttgaaatgactggagattatactccagatttgatggcc
ctgttgtctgctgatattatcatatctactcctgaaaagtgggatggtattagtcggaat
tggcatagtcgaagctatgtcacaaaggttggacttatgatattggatgagattcactta
ctgggagctgatcgtggacccatcctggaggttattgtttcaaggatgagatacatatca
tcacaaacagagcgtgcagtacggtttgttgggctctccacggctttggcaaatgcaggt
gatttggctgattggttgggtgttggtgaaattgggctcttcaactttaaacaaagtgtg
agacctgtacctcttgaagttcatatccagggatatcctggaaagtactactgcccaaga
atgaatagtatgaataaaccagcatatgctgcaatatgcacccattcaccgacgaaacca
gttcttatttttgtttcgtctcggcgtcagacaaggctgactgctttggaccttattcag
tatgcagcatcagatgaaaatccaaggcaatttttgagtatgccagaagaagctttgcag
atggtactttcccaggttactgatcaaaacctgaggcataccttacagtttggcattgga
ttgcatcatgctggactaaatgacaaagatagatctcttgttgaggagcttttttccaac
aacatgatccaggttttggtttgtacaagcacattagcttggggtgtaaatcttccagcc
catttggttattatcaagggaacagagtattatgatgggaaaacaaagaggtatgttgat
ttccccattacagatattttgcaaatgatgggtcgagccggtcgtcctcaatatgatcag
gatgggaaggcagttattcttgttcatgaacccaaaaagagcttttacaaaaagttccta
tatgaaccatttccagttgagagtagcctgagggagcagttgcatgatcacatgaatgca
gagattgtttctggaacaatatgtcataaagaagatgctgttcattatcttacttggacc
tacttgttccggagactgatggttaatcctgcatactatggcttggagagtggagaagat
gaaacattgagttcgtatttgtccagcttggtgcaaagcacctttgaggatctagaagat
agtgggtgcatcaaaatgactgaagacagtgtagagcctatgatgttgggaacaatagca
tctcagtattaccttagttacatgactgtatcaatgtttgggtcaaacattggaccagac
acgtctcctgaagtgttcttgcatattttgtcgggtgcttctgagtatgatgaacttcct
gtgcgacataatgaggaaaactataatgaagcattgtctaagagagtccggtatatggtg
gatcaaaatcggcttgatgatccacatgtcaaagcaaaccttctattccaggcacatttt
tcccagttagatttaccaatcagcgactatgtgactgacttaaagtcagtgttggaccaa
agcatacgcatcattcaagctatgatagatatatgtgccaatagtggatggcttacaagt
tcgattgcttgcatgcatctattgcagatggtcatgcagggtttgtggtttggtcaggat
tcagccctctggatgttgccgtgtatgaataatgaacttgctggctcattgtgcaagaga
ggaatttccaccgtacagcaactattagatcttcctaaggcaacattgcaaactgtgatc
ggaaacttccctgcttcaaaattatatcaggatctgcagcatttcccctgtatacgagtc
aaattaaaactgctgaagaagggcactgagagcaaaaagtctcttcaactgaacgtcaga
ttggagaagacaaatttgaggcggaatatgtcaagggcatttgcccctcgtttccctaag
attaaagatgaagcatggtggctgattcttggtaacaccagtactgctgaactatatgct
ctgaagagagtttctttctccgatcgcttagttacccacatggagttaccatcagatgtg
accttgattcaggggatgaaactaattatagtttcagattgctatattggttatgagcaa
gaacactccattgaaaatcttgctgcataa
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integrated database retrieval system
