Gossypium hirsutum (upland cotton): 107951302
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Entry
107951302 CDS
T04793
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107951302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107951302
03009 Ribosome biogenesis [BR:
ghi03009
]
107951302
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107951302
Spliceosome [BR:
ghi03041
]
Complex A
U2 snRNP components
U2 related factors
107951302
Complex B
107951302
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
107951302
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
90S particles
Helicases
107951302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
nSTAND3
SRP54
ABC_tran
T2SSE
AAA_7
FtsK_SpoIIIE
Flavi_DEAD
AAA_30
AAA_33
NACHT
TsaE
Motif
Other DBs
NCBI-GeneID:
107951302
NCBI-ProteinID:
XP_040938842
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All DBs
Position
A12:complement(84454454..84458023)
Genome browser
AA seq
725 aa
AA seq
DB search
MGTERKRKVSLFDVVDEPSAKIAKSNGLGLTETNANSSINKWNGRPYSQRYYDILEKRKT
LPVWQQKEEFLQVLRANQTLILVGETGSGKTTQIPQFVLDAVDIETPDKRRKMMIACTQP
RRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMTDPLLER
YKVIILDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQGYFNGAPLMKVP
GRLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPPGDILVFLTGEEEIEDACRKITKEVG
NMGDQVGPVKVVPLYSTLPPAMQQKIFEPAPPPVKEGGPPGRKIVVSTNIAETSLTIDGI
VYVIDPGFSKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTEKSFNND
LQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEG
NLTKLGEIMSEFPLDPQMSKMLVVSSEFNCSNEILSVAAMLSVPNCFVRPREAQKAADEA
KARFGHIDGDHLTLLNVYHAYKQNNEDQSWCYENFINHRALKAADNVRQQLVRIMSRFNL
KLCSTDFNSRDYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEW
VIYNEYVLTSRNFIRTVTDIRGEWLVDIAPHYYDLENFPQCEAKRVLEKLYRKKEKDREE
SRNRR
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagagaaaaaggaaggtgagcttgtttgatgtagtggacgagccatcggct
aagatcgcgaaatcgaacggtttaggtttaacggagacgaacgctaacagctcgatcaac
aagtggaatggacggccttattctcaaaggtattacgatattttggagaagaggaaaacc
ctccccgtttggcaacaaaaagaagagtttttgcaagtattgagggcgaatcaaaccctt
atcttggtcggtgaaaccggtagcggtaaaactactcagattcctcagtttgtattggac
gccgttgatatagaaactccggataaacgtaggaaaatgatgattgcttgtacccagcct
cgaagagtggctgccatgtctgtttcgcgtcgtgttgctgaagaaatggatgtgactatt
ggagaggaggtgggttatagtattcgtttcgaggattgcagtagtgcaaggactgttttg
aagtatttaacagatggtatgcttttaagggaagcgatgacagatcctcttttagaaaga
tataaagtgattattctcgatgaagctcatgaaagaactttggctacagatgtgctgttt
gggcttctgaaagaagttttaaagaatcgacctgaccttaagcttgttgttatgagtgct
acactagaggctgaaaagtttcagggttattttaatggtgcaccacttatgaaggttcca
ggtaggcttcaccctgtggagatattctacactcaggaacctgaaagggattacttggag
gctgcgatacggactgttgtgcagatacacatgtgtgaacctcctggtgatatacttgtt
ttcctaactggagaggaggagatcgaagatgcctgtcgcaaaataacgaaagaagtagga
aacatgggggatcaagtaggtcctgttaaagtagtgcctctatattcaactcttccacca
gcaatgcagcagaagatttttgagcctgctccacctcccgtgaaggagggtggccctcct
ggaaggaagattgtggtgtctacaaacattgccgaaacttccttgactattgatggcatt
gtttatgttattgaccctgggttttctaaacaaaaagtttataacccacgagtgcgtgtt
gagtccttattggtatctcctatatcaaaggcaagtgcacatcaaagatctggacgtgct
ggaagaacacaacctgggaaatgcttcaggctctacactgagaagagttttaataatgat
ctccagccgcagacctatcctgaaatattacgttcaaaccttgcaaatacagttctcacc
ttgaagaaactaggaattgatgatctggtacattttgattttatggacccacctgctccg
gagacattgatgcgtgcattggaagtgttgaattacttgggagcattggatgatgagggt
aacttaacaaagttgggtgagatcatgagtgaattccccttggatcctcaaatgtcgaag
atgctcgtagttagttctgagttcaactgttcaaatgagattctttcagttgctgccatg
ctttcagtacccaattgctttgtacggcctagggaggcacaaaaagctgcagatgaagca
aaagctcggtttgggcatatcgatggtgatcatctcactcttttgaacgtgtaccatgct
tacaaacaaaacaacgaggatcaatcttggtgctatgagaatttcatcaaccatagagcg
ctgaaggctgctgataatgttagacaacagctcgtgcgcattatgtccaggtttaatctc
aagctgtgcagcactgatttcaacagccgtgactactatgtcaacattagaaaggccatg
cttgccgggtatttcatgcaggtagctcatctggagcgcacggggcactacttgacagtt
aaagacaaccaggtggtgcacttgcatccatcaaattgcctggatcacaagccagagtgg
gtcatctacaacgagtatgtcctgacaagccggaattttattcgtactgtgacagatatt
cgtggtgaatggttagttgatatagcaccacattattatgatctcgaaaacttcccacag
tgtgaggcaaagcgagtcctcgaaaagctttacagaaaaaaggagaaggatcgggaggag
agtcgaaacaggagatga
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