Gossypium hirsutum (upland cotton): 107951320
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Entry
107951320 CDS
T04793
Name
(RefSeq) U3 snoRNP-associated protein-like EMB2271
KO
K14793
ribosomal RNA-processing protein 9
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ghi03009
]
107951320
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
90S particles
Other 90S particles
107951320
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_TEP1_2nd
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_SPT8
Beta-prop_TEP1_C
Beta-prop_DCAF12
NBCH_WD40
WD40_MABP1-WDR62_1st
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_Vps41
VPS8_N
WD_LRWD1
Beta-prop_EIPR1
SMC_ScpA
Beta-prop_WDR19_1st
Motif
Other DBs
NCBI-GeneID:
107951320
NCBI-ProteinID:
XP_016741811
UniProt:
A0A1U8NS50
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Position
A02:complement(40773192..40779325)
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AA seq
514 aa
AA seq
DB search
MKSKNEKKRGTSATKGCPKGKKFSLKNDPFFETESKKRRKMDYEDDDIESGGSEEEAEIQ
GASDGNGGEDENEIEETPGEIRKRVATELLDKMRAIARKEKEGRDGDEEVEEEEARDSLV
AKILQQEQLEESGRIKRVVASRLKKPETADGFRVMVKHRHTVTAVALSDDDLKGFSASKD
GTILQWDVESGKTERYQWPSEDILKSHGAKDPRGRLKKHSKSVLALAVSSDGRYLASGGL
DRHVHLWDIRTREHLQAFSGHQKPVSCLSFRQGTTDLFSGSFDRTIKYWNMEDRAYIDTI
CGHESEVLTLDCLRKERVLTVGRDRCMMLFKVLDQSRLVFRPPPTSLECCCFINNDEFLS
GSDDGSIQLWNVLRKKPVYIVKNAHALLPAGQNVEQKGCENIPDNCLENGDHKIEGYNFS
STYSWVSSISVCRGSDLAASGAGNGCVRLWAIETGRKDIQPLYDVPLMGFVNSLAFAKSG
QFLVAGVGQEPRLGRWGRLPTARNGVAIQPLKLL
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atgaagagcaagaatgagaagaagcgggggacgtcggccacaaaaggatgcccaaaaggg
aagaaattttcgctgaaaaatgatccctttttcgagacggagagtaagaagcggcggaaa
atggactacgaggatgatgacattgagtcaggtggttctgaagaggaggcggagattcag
ggggcttctgacggaaacggcggagaggatgagaatgagattgaggagactcctggtgag
attcggaaaagagtggcgacggagcttttggataagatgagggcaatagcaaggaaggag
aaagagggcagggatggggacgaggaagtggaagaagaagaggctagggattcgcttgtg
gccaagattttgcagcaagaacagcttgaggagagtggcaggattaagagagtcgttgct
tccaggcttaaaaagccagaaactgctgatggatttagagtcatggtgaagcatcgtcac
actgttactgctgtagctttatctgatgatgacttgaagggcttctcagcttccaaagac
ggtactattttacagtgggatgtagaaagtgggaagacagaaaggtaccaatggcctagt
gaagatattcttaaaagtcatggggccaaggatccaaggggtcgccttaaaaagcacagt
aaaagtgtattagccttggctgttagttcagatggccggtatttggctagtggaggctta
gaccgccatgttcatctatgggatattcgtacaagagagcatttacaggcattctcaggt
catcaaaagcctgtgtcatgtttaagttttaggcaaggtactacagatcttttttctgga
tcgtttgatcgaacaatcaagtattggaacatggaagaccgagcttacattgacacaata
tgtggtcatgaaagtgaagtgttgacccttgattgcctaaggaaagaacgagtattgaca
gttggccgtgatcgatgtatgatgttgtttaaggttctcgaccagtctcgattggttttt
cgtcccccaccaacatctttggagtgctgctgctttattaacaatgatgaattcttatct
ggctcggacgatggaagtattcaactttggaacgtattaagaaagaaacctgtatatatt
gtgaagaatgctcatgctctgctgcctgctggccaaaatgttgaacaaaaaggctgtgaa
aatatccctgataattgtttagaaaatggtgatcacaaaattgagggctataatttttca
tcaacatattcatgggttagttcaatcagtgtatgtcgaggcagtgaccttgctgcatca
ggagctggtaatggttgtgttcgattatgggccattgagactggcagaaaagatatccag
cctttatatgacgttccattgatgggatttgttaattccctggcttttgcgaaatctgga
cagttcctagttgcgggagttgggcaggaaccccgacttggaagatggggacgccttcca
actgctcggaatggagttgcaattcagcccttgaagctcttgtaa
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