Gossypium hirsutum (upland cotton): 107951335
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Entry
107951335 CDS
T04793
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107951335
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107951335
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
HNH
Motif
Other DBs
NCBI-GeneID:
107951335
NCBI-ProteinID:
XP_016741832
UniProt:
A0A1U8NS74
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Position
A05:51136057..51137707
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AA seq
437 aa
AA seq
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MGISSYSYSFFLLLFVVVIPNLEAHIAEYDEYWKARELEAIENLDKAYHPNPEEVVRHYN
DHFSRTMLEFYITKRVLAESKNGPCEVTNPVDSCWRCDPNWEKNRKKLADCAPGFARGTT
GGKGGEFYVVTDPIDNAADPKPGTLRHAVTQTGPLWITFKGSMTIKLEQELIVTSDKTID
ARGANVEICNGAGITVQFARNVIIHGLHIHHIIPAKGGKIKDGENHVGLRSASDGDGVSL
FGATNVWLDHLSLHHCVDGLIDVIQGSTAVTISNGHFTDHNDVMLFGASDSYSADEKMQV
TVALNHFGKGLVERMPRCRFGFIHVVNNDYNHWFLYAIGGTSHPTIISQGNRYSAPGTFA
AKEVTCRGLLKPAQWKNWNWVSQGDHFENGAFFTPSGSPSASKQFGADKMIPFKPGQMVP
ELTKYAGPLSCTIGRPC
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgggtatttctagttacagttatagtttctttctcttgttatttgttgtcgtaatccca
aacctagaagctcacattgctgaatatgatgagtactggaaggcacgagaattggaagcc
attgagaacctcgacaaggcctatcaccccaacccggaggaggtggttcgccattacaat
gaccatttctctaggaccatgctcgagttttatattaccaaaagggtgttagcggaatca
aaaaatggtccctgtgaggttaccaaccccgttgatagttgctggcgatgtgatcctaat
tgggaaaagaacaggaagaagttggccgactgtgcccctggatttgctcgtggtactacc
ggtggaaagggtggtgagttttatgtggtcactgaccctattgataatgctgctgacccc
aagcctggaactctgcgtcatgctgtcacccaaaccggaccactttggatcactttcaaa
gggtccatgaccattaagctggaacaagagctcattgttacaagtgacaagaccattgat
gcgaggggagccaatgtggaaatttgcaatggtgctggtattactgttcaatttgcgagg
aatgtcattatccatggccttcatatccatcacattattcccgccaagggtggaaagatc
aaggatggtgaaaaccacgttgggttacggagtgccagcgacggagatggggtctctctg
tttggagcaaccaacgtttggctcgaccatctttcccttcaccattgcgtcgatggtctt
atcgatgtcattcaaggttccactgccgttaccatttctaacggccacttcactgaccac
aacgatgtgatgttgttcggagcaagcgattcctacagtgccgacgagaagatgcaggtc
actgttgctttgaaccacttcggtaaaggattggtagagaggatgcctaggtgccgattt
ggttttattcatgtcgtcaacaatgactacaatcactggttcctgtatgccattggcggc
accagccaccctacaattatcagccagggcaacaggtattccgcgccaggtaccttcgca
gctaaggaggtgacctgtaggggcctcttaaaaccggcacagtggaagaattggaactgg
gtatcacaaggtgaccacttcgagaatggtgccttttttactccatccggtagtccgagt
gccagtaagcaatttggtgccgacaaaatgatacctttcaaacccggtcaaatggtcccc
gaactcacaaagtatgctggaccactcagctgcacaatcggccgtccttgctaa
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