Gossypium hirsutum (upland cotton): 107951466
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Entry
107951466 CDS
T04793
Name
(RefSeq) putative DEAD-box ATP-dependent RNA helicase 29
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ghi03009
]
107951466
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107951466
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Helicases
107951466
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
107951466
NCBI-ProteinID:
XP_016742018
UniProt:
A0A1U8NVB1
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Position
A02:12373175..12378977
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AA seq
787 aa
AA seq
DB search
MAPVDERFVSSKAELKRKQKEKKKAKSGGFESLNLSPNVYRGIKRKGYRVPTPIQRKTMP
LILAGNDVVAMARTGSGKTAAFLVPMLEKLKQHVPQGGVRALILSPTRDLALQTLKFAKE
LGKFTDLRISLLVGGDSMESQFEELAQNPDIIIATPGRLMHHLTEVDDMTLRTVEYVVFD
EADSLFGMGFAEQLHKILTQLSENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDLETKI
SPDLKLVFFTLRQEEKHAALLYLARDHISSDQQTLIFVSTKHHVEFLNIMFREEGIEPSV
CYGDMDQDARKINISKFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVG
RAARAGRTGTAFSFVTSEDMPYLLDLHLFLSRPIRAAPTEEEVFQDMDGAMNKIDLAIAN
GESVYGRFPQNIIDLISDRVRDMIDSSAELNNLQRTCANAFRLYSKTKPLPARESIKRAK
DLPREGLHPIFRNVLEGGELAALAFSERLKAFRPKQTILEAESEATKSKHSQWVGVMKKK
RDIHEKIINLVHKQRFSNHVEKEIEPDITSSKINDTKEARGSKRKARNFKDEEYYISSVP
TNHHTEAGLSVRSNEGFGSNRLESAVLDLVADDSEGLQKQKSRYHWDKRGKKYVKLNNGE
RVTASGKVKTESGAKVKTEKTGIYKKWKERSHKKVYLKGTTNGENGEATTISSGDYWSRG
NGRNFRGNKKLQHSVPNAHVRSEIKDFEQVRKERQKKANNKLSYMKGKANKKKGKNFGKS
GKRGKSK
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atggctccggtagacgagcgttttgtaagctccaaagcggagcttaaacgaaaacagaag
gaaaagaagaaggcaaaatctggtggcttcgagtccttaaacctaagccctaatgtctac
agaggaatcaagcggaagggatacagagtccctacgccgattcaacgcaagaccatgcct
cttattcttgctggaaacgacgtcgttgccatggcccggactggttctgggaagacggcg
gcttttttggtccccatgctggagaaactgaagcagcacgtgcctcagggcggtgtccga
gctctcattttgtctccgaccagagatttggccttgcagactttgaagtttgccaaggaa
ttgggaaaatttacagatcttcggattagtttgcttgtcggcggtgatagcatggaaagt
cagtttgaagagttggcacaaaaccctgatattattattgctactcctggtagactgatg
caccatctaactgaggttgatgatatgacacttcgtacagtagaatatgtggtatttgat
gaagcagattccctctttggcatgggttttgctgaacagttgcataaaattcttacccag
cttagtgaaaaccgtcagaccttgctctttagtgcaactttaccaagtgccctagcagag
tttgctaaggcaggactgcgagaccctcaacttgtgcggcttgatttagaaaccaagatt
agccccgacttaaagcttgtttttttcaccttgcgtcaggaagaaaaacatgctgcactg
ttgtatttggcaagggaccacattagttctgatcaacaaactttgatatttgtttccact
aaacatcatgtagagttccttaatattatgtttcgagaggagggtattgagccttctgtg
tgttatggtgatatggatcaagatgctcggaaaattaatatttcaaaattcagatcaaga
aaaactatgttgcttattgtgacagacgttgctgctaggggtattgacatacctttacta
gataatgttattaactgggacttccctccgaagcccaaaatttttgttcatcgtgttgga
cgagcagcaagggcaggtaggactggtactgcattttcctttgtgacatctgaggatatg
ccgtaccttttagatcttcatctatttctgtcaagaccaatcagggcggcacctactgaa
gaggaggtttttcaagatatggatggggcaatgaataaaattgatctagcaattgcaaat
ggagaatctgtttatggacgtttcccccaaaacattattgatcttatttcagatagggtt
agggacatgattgattcatctgcagagcttaataatttgcagaggacatgtgcaaatgct
tttcgtctgtattccaagactaaaccattgcctgcaagggagtccatcaaaagggcaaag
gatttgccccgtgaaggtttgcatcctatctttagaaatgtactggaaggaggtgaattg
gcggcacttgcattttctgaacgtctgaaagctttcagacccaagcagaccattctggaa
gctgaaagtgaagccactaaatcaaagcattctcagtgggtcggtgtgatgaagaagaag
agagatatacatgagaagatcattaacttggttcataagcagcgctttagcaatcatgtg
gaaaaggaaatcgaacctgacattacttcttcaaagataaatgacacaaaagaggctcgt
ggttctaaaagaaaggcgaggaacttcaaggatgaggagtattacataagttctgtgcca
acaaatcatcatacagaggctggtctctcagtaagaagtaatgaagggtttggatcaaat
aggttggaatctgctgtactggatcttgttgctgacgatagtgaaggtttgcagaaacaa
aaatccagatatcattgggataagaggggtaaaaagtacgtcaaattgaataatggtgaa
cgtgttacagctagtggaaaggtgaagacagagagtggtgccaaagtaaaaactgagaaa
acaggaatatacaagaagtggaaagaacgatctcacaaaaaggtatatttgaagggaacc
accaacggagagaatggtgaggcaacaacaatttcatcaggagactattggtcacgaggt
aatggtagaaacttcagagggaacaagaaattgcagcattctgtgcctaatgctcatgta
cgttcagagatcaaagatttcgaacaggtgcgaaaggaaagacagaagaaggcaaataat
aaactgtcatatatgaagggcaaagccaacaagaaaaagggtaaaaattttggtaaaagt
ggtaaaagaggaaaatccaagtag
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