Gossypium hirsutum (upland cotton): 107951674
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Entry
107951674 CDS
T04793
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus-like isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107951674
09122 Translation
03013 Nucleocytoplasmic transport
107951674
03015 mRNA surveillance pathway
107951674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107951674
03041 Spliceosome [BR:
ghi03041
]
107951674
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107951674
Spliceosome [BR:
ghi03041
]
Complex C
Other components
EJC/TREX
107951674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
107951674
NCBI-ProteinID:
XP_040938064
LinkDB
All DBs
Position
A02:99268075..99272407
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AA seq
722 aa
AA seq
DB search
MSSKYQILDNRPIDQWKVTELKEELKRRKLITRGLKEELVRRLDEAVRLERENAETEEDN
GFNSDPQPTDEGGIEKAMPVTSETVKDDVDHSGSKIKESGVKVHVDINESAAALGHEGVQ
GSDSLVEKELVSETTTIQTEITVTKNVVSEVPSTEKESSGKNENVNTDIEVESEDSKLQF
KTDDPKPRLENEGPKPELENEGSKPEVESEGLKPEGENDDPKGQLQCVGSKPQLDLEESK
VQLENEGLKAPHEDDVRDSSAPNIQVSEVSPDLGFQVKSDSISTDSVSNNEKIELKDNIL
ADNVKLDLDVVKPEMVEPSSSNVVPISGESHPMDVEDPPENKAPVDERDDKNVTNVDIGN
KNDSAEMAYSEKLNLDRSSGDDSMEEDVLESKQIDSKCSTDEMGDKSEKNRAPIVKEKSP
VGVLRDDLSIDKKDTLVENKSRSFVPAEKRKLHDQEPVGNNELSKWRKWNSDNIKVPEHQ
GNLAPTTTPKDTAQPAALRLNFSRSDSTASEGTPKERVVPPSQNAPTTSLRIDHFLRPFT
LKAVQELLGKTGTVTNFWMDHIKTHCYVTYSSVEEAIETRNAVYNLQWPPNGGRLLVADF
VDPQEVKTRLDAPPQTPTTPGTSGSIAPQAQPASQPQPSPRQQVSRQQHPPPSALPPPPP
LSNPPPVRERLPLPPPPAEKVDPPIVTLDDLFWKTKAIPRIYYLPLSDEQVAAKQAAHGR
NI
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaaaatatcaaatacttgacaatagaccaattgatcaatggaaggttacagag
ttgaaagaagaacttaagaggcggaaactgataactcggggcttgaaagaggagttggta
agacggttggatgaggccgttagattggaaagggaaaatgctgaaactgaggaagataat
ggttttaattctgatccccagcctacagatgagggagggattgaaaaggcaatgccagtt
acttctgagacagttaaagatgatgtggatcatagtggcagtaagatcaaggagagtggg
gtaaaggttcatgttgacattaatgagagtgcagctgctttgggtcatgaaggagttcaa
ggaagcgacagcttggtggaaaaggagcttgtttctgaaaccaccactattcagactgag
ataacggttaccaagaatgtggtatctgaggtaccatctactgagaaagagagctcagga
aaaaatgagaatgtgaatactgatatcgaagtggagagtgaggattctaagctccagttc
aagactgatgatccaaagcccaggttggagaatgagggtccaaagcctgagttggaaaat
gagggttcaaagcccgaggtggagagtgagggtctaaagcctgagggggagaatgatgat
ccaaagggccagctgcagtgtgtgggttcaaagcctcagctggaccttgaagagtcgaag
gtgcagctggagaacgagggtttgaaggctccccacgaagatgacgtgcgtgattcgtct
gctccaaacatccaggtatctgaggtcagccctgatttagggtttcaagtaaaatctgat
tctatttctactgattctgtctcaaataatgaaaagattgaattaaaggataatatactt
gctgataatgtcaaattagacctagatgttgtaaagccagagatggtggaaccatcatcc
agcaatgttgttccaattagtggtgaatcacatccaatggatgttgaagatccgcctgag
aacaaggcacctgttgatgagagagatgacaagaatgttacaaatgtagacatcggtaat
aaaaatgacagtgctgagatggcatactcagaaaaattaaatttggatagaagttctggt
gatgactctatggaggaggatgtgcttgagagtaaacaaattgattcaaaatgtagtact
gatgaaatgggagataagagtgagaagaatagagcacctattgtcaaggagaaaagtcct
gttggtgttttaagagatgatttatctatagataaaaaggacaccttggttgagaataag
agccggtcttttgttcctgctgagaaaagaaagcttcatgatcaggaacctgttgggaac
aatgagctttctaaatggcgtaaatggaattctgacaatataaaagttccagaacatcaa
ggcaatcttgcgcccaccacaacacctaaagacacagctcagcctgctgctttgagactt
aacttctctagatcagactcaacggcaagtgaaggtacaccaaaggaacgtgttgttccc
ccttcacaaaatgctccaaccacttccctcagaattgatcattttcttcgcccttttacc
ttgaaagctgtacaagaacttctagggaaaactgggactgtaacaaacttctggatggac
catattaagacccattgctatgttacatattcatctgtagaagaagcaatagagacacga
aatgctgtttacaacctacaatggccacctaatggtggacgcctattggtggctgacttt
gttgatccccaggaagttaaaacccggcttgatgctccaccacagactccaactactcct
gggacttctggttctattgctcctcaagctcaacctgcttctcagccccagccctctcca
cgtcagcaggtttctagacagcagcatccaccgccttctgcacttcctccaccaccgcct
ttgtctaaccctccaccagttagagaaaggctccctcttcctccaccacctgcagagaaa
gtagatcctcctattgtcactctggatgatctattttggaaaaccaaagcaattcctcgt
atctactatttgcctttgtctgatgaacaagttgcagcaaagcaagcagcacatggcaga
aacatctag
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