Gossypium hirsutum (upland cotton): 107952018
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Entry
107952018 CDS
T04793
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1
KO
K15172
transcription elongation factor SPT5
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
107952018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107952018
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107952018
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
107952018
RNA polymerase I system
107952018
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
107952018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
KOW6_SPT51-2
Spt5-NGN
KOW4_SPT5
KOW2_Spt5
KOW
KOW5_SPT5
KOW7_SPT5
KOWx_SPT5
Spt5_N
DUF4438
ProQ_C
KOW6_SPT5
Myosin_N
PSP1
Motif
Other DBs
NCBI-GeneID:
107952018
NCBI-ProteinID:
XP_016742744
UniProt:
A0A1U8NXN6
LinkDB
All DBs
Position
A02:complement(11970552..11978814)
Genome browser
AA seq
1039 aa
AA seq
DB search
MARRRDEEDDDVDDEEYEDEEDQLVDNEDYEDDEDVGRRPGGSSRKRRRSDFIDDVAEED
DEEDEYEDDDDEVYGGGGKKHSKAPRVGSQFFDLEAQVDSDEEEEEEEGEDDFIVETGAD
LPDEDVGRRMHRRPLPLREDEQEDVEALERSIQARYARSSHTEYDEETTDVEQQALLPSV
RDPKLWMVKCAIGRERETAVCLMQKFIDKGVELQIRSVIALDHLKNYIYIEADKEAHVRE
AVKGLRNIFPAKIMLVPIREMTDVLSVESKAIDLSRDTWVRMKIGTYKGDLAQVVDVDNV
RQRVTVKLIPRIDLQALANKLEGREVAKKKAFVPPPRLLNVDEARELHIRVERRRDPVTG
DYFENIGGMLFKDGFLYKTVSMKSINAQNIKPTFDELEKFRAPSTNGVEMVGLSTLFANR
KKGHFMKGDAVIVVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNEKELCKYFEPG
NHVKVVSGTKEGATGMVVKVEQHVLIILSDTTKEHIRVFADDVVESSEVTTGITKIGEYE
LHDLVLLDNNSFGVIIRVESEAFQVLKGVPERPEVSLVKLREIKCKVDKKFNVQDRYRNT
VAVKDVVRILEGPCKGKQGPVEHIYKGVLFVYDRHHLEHAGFICAKADSCCIVGGSRSNG
DRSGGSLSRFGGFKAPSRVPPSPRRFSRGGPPFGSGGRHRGGRGGHDALVGTTVKIRQGP
YKGYRGRVVDIKGQSVRVELESQMKVVTVDRDSISDNVVISTPHRESSRYGMGSETSMHP
SRTPLHPYMTPMRDPGATPVHDGMRTPMRDRAWNPYAPMSPPRDNWEEGNPASWGTSPQY
QPGSPPSRAYEAPTPGSGWASTPGGSYSEAGTPRDSSSAYANAPSPYMPSTPSGQPMTPS
SGSYIPGTSGGQPMTPGTGLDMMSPIIGADNEGPWFMPDILVNVRKSGDESLGVIQEVLS
DGSCKVALGPNGSGDTVIAMPSEMEIVPPRKSDKIKIMGGLLRGITGKLIGVDGTDGIVR
IDDSLDVKILDLVILAKLH
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atggcgagacgaagagacgaggaagatgatgatgttgatgatgaagagtacgaagatgag
gaggaccagttagtggacaatgaggattacgaggacgacgaagacgtagggagacgtcca
ggtggttcaagcaggaagcgacgcagatctgatttcatcgatgacgtggcggaggaggac
gatgaggaagatgaatatgaggatgacgacgatgaggtttatgggggcggtggcaaaaag
catagcaaagctccgcgtgttggctctcagttttttgatcttgaagcacaggtggatagc
gatgaggaagaggaagaagaggagggcgaagacgacttcatagttgagactggagctgat
cttcctgatgaagatgttggtcgaaggatgcaccgtcgcccattaccactgcgggaggat
gaacaagaagatgttgaagctcttgagagaagcattcaggctaggtatgctagatcaagt
cacacagaatatgacgaggagacaactgatgtggaacagcaagcacttttgccatcagta
agagatccaaagctgtggatggtcaaatgtgcgattggtcgtgaacgagagactgctgtt
tgcctcatgcagaagttcatcgataaaggagttgaattgcagatcaggtctgttattgct
cttgatcacctcaaaaattatatttatattgaagcagacaaggaagcccatgtacgagag
gctgtcaaaggtctacgtaatatatttccagcaaagattatgcttgttccaataagagaa
atgactgatgttttatcagttgaaagtaaagcgattgatctttcaagagatacctgggtc
agaatgaagattgggacatataagggtgatcttgctcaagtagttgatgtggataacgtg
cggcagagagtcactgtgaaactgatccctaggattgacttacaggctcttgcaaataaa
ttggaaggcagagaagttgcaaagaagaaagcctttgtccctcctcctcgtttattgaat
gttgatgaggctagggaacttcatattcgtgtagaacgcaggcgagatccggttactggt
gattactttgagaatattggtggcatgcttttcaaagatggattcttgtataaaacagtg
tccatgaaatcaattaatgctcaaaacataaaaccgacttttgatgaacttgaaaagttc
cgggcacctagcacgaatggagttgaaatggttggtttgtcaactttgtttgcaaacagg
aagaaaggccacttcatgaagggtgacgctgttattgttgtcaagggggatttgaaaaat
ttaaagggatgggttgaaaaggttgaggaagagaatgtccatatcagacctgaaatgaaa
ggccttccgaaaactcttgctgttaacgaaaaagagctgtgtaagtactttgagcctggg
aatcatgtgaaggttgtgtctgggacaaaggaaggtgcaactggcatggttgttaaggtg
gagcagcatgtgctcatcattttatcggatacgaccaaagaacatattcgtgtttttgct
gatgatgttgttgagagctctgaagtgactactggtattacaaaaattggagagtatgag
cttcatgatcttgtgctactagataacaatagctttggtgtaattatacgtgtagaaagc
gaagcgtttcaggttcttaagggtgtcccagaaagaccagaggtttctcttgtcaaattg
agggaaatcaaatgcaaggttgataagaaatttaatgtgcaagacagatataggaatact
gttgctgttaaagatgtagttaggatccttgaaggtccttgtaaagggaaacaaggtcct
gtagagcacatatataaaggagttctgtttgtgtatgatcggcatcaccttgaacatgct
ggctttatatgtgctaaagctgattcttgttgtatagtgggaggatcacgttccaatggt
gacagaagtggtggttctctctcaagatttggtggcttcaaggctccctcccgtgtacca
ccttcaccgaggagattttctaggggaggtcctccatttggttctggaggaaggcacaga
ggcggaagaggagggcatgatgctttggttggtactacagtgaaaattcgccagggtcct
tataagggttaccgtggacgtgttgtagatattaaaggtcaatcagttcgagttgagctg
gagtctcaaatgaaggttgttacagttgatcgcgattccatatctgataacgtggttatt
tcaacaccccaccgtgagtcatcccggtatggtatgggaagtgaaacttctatgcaccct
tcacgaactccattacatccatacatgactcctatgagagatcctggagcaacacctgtc
catgatggcatgagaacacctatgcgtgacagggcctggaatccttatgcacctatgagt
ccacccagggataattgggaagaaggaaaccctgcctcttggggaaccagtcctcagtat
cagccaggaagtcctccttcaagggcatatgaagcacctactcctggttcaggttgggct
agtactcctggcggtagttacagtgaggctggaacaccgagagatagcagttcagcttat
gccaatgctccaagtccttatatgccatcaactcccagtgggcagcctatgacaccaagc
tcaggatcctatattccgggtacatctggagggcagccgatgacaccaggaactggtctt
gatatgatgtctccaataataggtgctgacaatgaaggaccttggttcatgccagatatt
ttggtcaacgtgcgcaaatctggagatgagtctcttggagtcatccaagaagtgctttcg
gatgggtcctgtaaggtggctttgggtccaaatggcagcggtgatacagtaattgcaatg
cctagtgagatggagatagtgccaccgaggaaatcggacaagatcaaaatcatgggcggc
ttgcttcgcggtataaccggtaagttaattggcgttgatggtacggatggcattgttagg
atagatgacagtcttgacgtgaagatattagacttggttatactagcaaaattacactga
DBGET
integrated database retrieval system
