Gossypium hirsutum (upland cotton): 107952030
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Entry
107952030 CDS
T04793
Name
(RefSeq) small RNA degrading nuclease 5 isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
107952030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ghi03009
]
107952030
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
RNases
107952030
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Glyco_tranf_2_3
Ferritin
Motif
Other DBs
NCBI-GeneID:
107952030
NCBI-ProteinID:
XP_016742758
UniProt:
A0A1U8NXF9
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All DBs
Position
A02:12237063..12242153
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AA seq
564 aa
AA seq
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MASLKEMSEEAIPEEEKKERSNYFDIYGPQAKAELVFKTPEADSTLNLQDVQGLVTWVLA
DGFMPSWVFIKNKPLIPKVVMLYVPGLDAALYIAQSMKLSGFKQSCGNPRALLALSCVSD
GMQTIDALLTCKVKRKRNVIDSARDVSQSAEQETSISSMDSAEILKDIPFPISYYTLTAK
ELEDNGFCYDQPGFLCTRPAPDGSSPYEMLALDCEMCITSEGFELTRVTLVDIEGQVVLD
KLVKPSNAITDYNTRFSGITHEMLSGVTTTLQNVQEDFLTLVHKDTILVGHSLENDLLAL
KISHDLIIDTSVIYKHPRGGSYKSALRVLAKRFLSREIQQSGSGHDSIEDARAAMDLALL
KIRNGPDFGSPPSFMRRKLLTLLGDCGKTSSFIDDVSIVKRYASESSHAIPVCSDDEALL
KARKEVKNDRVHFVWTQFSELNSYFRKQAEDDVKLNGKLAEMISLLTCDKKPAKHKGVKY
NISTELKEILTRIDARVRSLHTALPTNSMFIICTGHGDIAIVHRLRKMLTEQSETMIPRE
KLIKVLEELQAQAEVALCFVGMKH
NT seq
1695 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctctaaaggaaatgagtgaagaggcaattccagaggaggaaaagaaggagagg
tctaattattttgatatttatggacctcaagcaaaagcagaacttgttttcaagacgcca
gaagctgacagtactttgaatttgcaagatgttcaaggacttgttacctgggttcttgcc
gatggattcatgccttcctgggtctttattaagaataagccgctgataccgaaagttgtt
atgctttatgtccctggcttggatgcagctttgtacatagctcaatccatgaaactttct
ggttttaaacaaagttgtggcaatcctcgggcacttttagcacttagttgtgtatcagat
gggatgcagacaatagacgcactcctaacgtgcaaagtgaagagaaagagaaatgtaatt
gattcagcaagggatgtaagccaatcagccgaacaagaaacatccatctcttcaatggac
tctgcagaaatcttgaaagacattcctttccccatttcatattatacgcttacagcaaag
gaactagaagacaatggattttgttatgatcaaccaggttttctttgtactcgtcctgct
cctgatggatcttctccttatgaaatgttggcacttgactgtgaaatgtgtataacaagt
gagggttttgagcttacaagagtgaccctggttgatattgaaggacaggttgtactggat
aaattggttaaaccatcaaacgctatcaccgattacaacacaaggtttagtggaatcaca
cacgagatgttgagtggagtgactacaactcttcaaaatgttcaggaagattttctgaca
ctggttcacaaagataccatcttagttgggcactccttggagaatgacttattagctttg
aaaatttctcatgatctgataattgatacatctgtaatatacaaacaccctcgcggtgga
tcttataaaagtgctcttcgagttcttgcgaagagatttctttctcgggaaatacagcag
tcggggagtggacatgatagcattgaagatgcaagagctgctatggatttggctctgtta
aagattagaaatggacctgattttggttcgccaccatcctttatgcgtaggaagctcctt
acacttctgggtgattgtggcaagacctcctctttcattgatgatgtttccatagtgaag
cgatatgcttctgagtcatcccatgcaatcccagtttgctctgatgatgaagcactttta
aaggctagaaaagaggtcaagaatgaccgtgttcacttcgtctggacacaattttcagaa
ttgaattcctatttcagaaaacaagctgaggatgacgtaaagttgaatggaaagcttgca
gaaatgatatcattgcttacatgtgataagaaacctgccaaacacaaaggagtaaaatac
aatatttcaactgagctaaaggaaattttaacacgcatcgacgctagggttcgtagtctc
cacactgcattacccactaactcgatgtttataatatgcaccggacatggggacatagcc
attgttcatagattgaggaaaatgctgacagagcaaagtgaaacaatgattccacgtgag
aaacttattaaggttttggaagagctacaagcccaagctgaggtagcgttatgttttgtt
ggtatgaagcattag
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