Gossypium hirsutum (upland cotton): 107952252
Help
Entry
107952252 CDS
T04793
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
107952252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107952252
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
107952252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_6
LRR_4
F-box-like
F-box
LRR_NXF1-5
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
107952252
NCBI-ProteinID:
NP_001314527
UniProt:
A4KA30
LinkDB
All DBs
Position
A08:15017009..15020354
Genome browser
AA seq
586 aa
AA seq
DB search
MHKKMAFSFPDEVLEHVFSFIQSDKDRNAVSMVCKSWYEIERWCRRKVFVGNCYAVSPRM
VIRRFPEFRSIELKGKPHFADFNLVPDGWGGYVFPWIAEMAGAYPWLEEIRLKRMVVTDE
SLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAASCKNLKELDLRDCEVDDLSAHWLSHFP
ETYTSLVSLNISCLGSDEASFSALERLVHRCTNLKTLRLNRAVPLDKIANILRHAPQLVE
FGTGTYTADVRPDVYSDLAGVLSSCKELKSLSGFWDVIPDYLPAIYPVCSKLTSLNLSYA
TIQSPDLIKLVSHCPNLQRLLVLDYIEDSGLEVLASSCKDLQELRVFPSDPFGAEPNVSL
TEQGLVAVSLGCPKLQSVLYFCRRMSNEALVTIARSRPNFTRFRLCIIEPKTADYLTLEP
LDVGFGAIVQYCKDLRRLSLSGLLTDRVFEYIGTYAKKLEMLSVAFAGDSDLGLHHVLSG
CESLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCAVSFAACKLLGQKMPRLNVEVID
ERGPPDSRPENCPVDKLYIYRSIAGPRFDMPPFVWTMDEDSGLRLS
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgcataagaaaatggcgttttcgttcccagacgaggtgctagagcatgtgttctcgttc
atacaatcagataaagaccggaacgcggtgtcgatggtgtgtaaatcgtggtacgagatc
gagcgttggtgtcggaggaaagtgtttgtggggaactgttacgctgtgagcccaaggatg
gtgatcagacgtttccccgagtttagatccattgagttgaaagggaaaccgcactttgcg
gatttcaatctggtgccggacggatggggaggttacgtgtttccttggatcgcggagatg
gctggagcttatccttggctcgaagagattcgacttaaaaggatggtcgttaccgacgaa
agcttggagcttattgctaagtcgtttaagaacttcaaagtattggtgctttcttcttgt
gaagggttttcaactgatggtctcgctgccattgctgctagctgcaagaatctgaaagag
ctggacttgcgagactgtgaagtggatgatttgagtgcgcattggctcagtcattttccc
gaaacatacacatcactggtgtcccttaacatttcttgcttagggtctgatgaagctagt
ttttcagcgttggaacgtctggtgcatagatgtactaacctcaagactcttcggctcaac
cgtgcggtgcccctggataagattgccaacattttacgtcatgcaccgcagctggttgaa
ttcggtactggtacctacacggctgatgtacggccagatgtctactcagatttggccggg
gtgctttctagctgcaaggaactaaagagcttgtctggattttgggatgtgatcccggat
taccttcctgccatttaccctgtctgctctaaattaacatcactgaacctgagctatgct
actatacaaagtcctgatcttatcaagcttgtaagccactgtccgaatttgcagcgccta
ttggtacttgattacattgaagatagtgggcttgaggtgcttgcatctagttgcaaggac
ttgcaagaattacgcgtgtttccatctgatccatttggtgcagagccaaatgtgtccttg
acagaacagggccttgttgccgtatctttgggttgtcccaagctacaatcagtattgtac
ttctgccgccgaatgtctaatgaggcattagttaccattgctcgtagccgtccaaacttc
acaaggtttcgcctttgtataattgagcctaaaacagctgattacctgactctcgagcca
cttgatgttggttttggagccattgttcagtactgcaaggatctcaggcgtctttccctc
tctggtcttcttacagatcgtgtattcgaatatattgggacatacgcgaagaaacttgag
atgctgtctgtggcttttgcaggagatagtgatttgggactacatcatgtgctttccggg
tgtgaaagccttcggaaactggagatcagagattgcccctttggtgacaaggctcttttg
gccaatgctgcaaagctggagacaatgcgatccctttggatgtcttcttgcgctgtgagc
ttcgcagcatgtaagctgctaggtcagaagatgccaaggttgaatgttgaagttatagat
gagaggggacctcctgattcaagaccagagaactgcccagttgataagctctacatatat
aggtccattgcagggccaaggttcgacatgcctccttttgtttggacaatggatgaagat
tctggattgaggctttcatga
DBGET
integrated database retrieval system
