Gossypium hirsutum (upland cotton): 107952554
Help
Entry
107952554 CDS
T04793
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107952554
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107952554
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107952554
NCBI-ProteinID:
XP_016743269
UniProt:
A0A1U8NZ58
LinkDB
All DBs
Position
A05:51111038..51112693
Genome browser
AA seq
437 aa
AA seq
DB search
MGISSYSYSFFILFYVVVIPTLEAHITEYDEYWKARELEAVENLDKAYHPNPEEVVRHYS
DHFSRTMLEFYITKRVLAESKNGPCEVTNPVDSCWRCDPNWEKNRKKLADCAPGFARGTT
GGKGGEFYVVTDPIDNAADPKPGTLRHAVTQTGPLWITFKGSMTIKLEQELIVTSDKTID
ARGANVEICNGAGITVQFAKNVIIHGLHIHHIIPAKGGKIKDGENHIGLRSASDGDGVSL
FGATNVWLDHLSLHHCVDGLIDVIQGSTAVTISNCHFTDHNDVMLFGASDSYSADEKMQV
TVALNHFGKGLVERMPRCRFGFIHVVNNDYNHWFLYAIGGTSHPTIISQGNRYSAPGTFA
AKEVTCRGLLKPAQWKNWNWVSQGDHFENGAFFTPSGSPSASKQFGADKMMPFKPGQMVP
ELTKYAGPLSCTISRPC
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atgggtatttctagttatagttatagtttttttatattgttctatgttgtggtaatccca
accctagaagctcacatcactgaatatgatgagtattggaaggcacgagaattggaagct
gttgagaacctggacaaggcctatcaccctaacccagaagaggtggtccgccattacagt
gaccacttctctagaaccatgctcgagttttatatcaccaaaagagtgctagcggaatca
aaaaatggtccctgtgaggttaccaaccccgttgatagttgctggcgatgtgatcctaac
tgggaaaagaacaggaagaagttggccgactgtgcccctggatttgctcgtggtactacc
ggtggaaagggtggtgagttttacgtggtcactgaccctattgataatgctgctgaccct
aagcctggaactctgcgtcatgctgtcacccaaaccggaccactttggatcactttcaaa
gggtccatgaccatcaagctggaacaagagctcattgttacaagtgacaagaccattgat
gcgaggggagccaatgtagaaatttgcaatggtgctggtattactgtccaatttgcaaag
aacgtcattatccatggccttcatatccatcacattattcccgccaaaggtggcaagatc
aaggatggtgaaaaccacattgggttacggagtgccagcgacggagatggggtctctctt
ttcggagcaaccaacgtttggctcgaccatctttcacttcaccattgtgtcgatggtctt
atcgatgtcattcaaggttccactgccgttaccatttctaactgccacttcactgaccac
aacgatgtgatgttgttcggagcaagcgattcctacagtgctgacgagaagatgcaggtc
actgttgctttgaaccacttcggtaaaggattggtagagaggatgcctaggtgccgattt
ggttttattcatgtcgtcaacaatgactacaatcactggttcctgtatgccattggcggc
accagccaccctacaattatcagccagggcaacaggtattccgcgccaggtaccttcgca
gctaaagaggttacttgtaggggcctcttaaaaccggcacagtggaagaattggaactgg
gtatcacaaggtgaccacttcgagaatggtgccttttttactccatccggtagtccgagt
gctagcaagcaatttggtgctgacaaaatgatgcctttcaaacctggtcaaatggtccct
gaactcacaaagtatgccggaccacttagctgcacaatcagccgtccttgctaa
DBGET
integrated database retrieval system
