Gossypium hirsutum (upland cotton): 107952728
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Entry
107952728 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107952728
Spliceosome [BR:
ghi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
107952728
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
UTP6_C
TPR_16
TPR_12
NRDE-2
ARM_TT21_5th
TPR_MalT
TPR_10
Motif
Other DBs
NCBI-GeneID:
107952728
NCBI-ProteinID:
XP_040974013
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All DBs
Position
A07:41299891..41310502
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AA seq
878 aa
AA seq
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MGDSEAVVADSSAMMDYTSAAYNSAGSGAYSSQATGYPTASGGHPNSAGQEGQSSEMYDG
KPAGGATDETAVAVGNRAADASKAAGCNYPLNGNVVNAAGNATTVENGNAFDNLGGASAA
PEFVDGSAPTISAEEERLWSILRANSLDFNAWTALIEETEKVAENNILKIRKVYDAFLAE
FPLCYGYWKKYADHEARIGSMDKVVEVYERAVQGVTYSVDIWVLYCAFAIETYGDPETIR
RLFERGLAYVGTDYLSFPLWDKYIEYEYMHQEWSRLAAIYTRIFENPNQQLDRYFNSFKE
LAGSRPLSELGTAEEAAANVSGPVSEADGLVNEREVHPDAAEQMQKPLTAGSTDAEELEK
YVAIREELYKKAKELDSKIIGFETAIRRPYFHVRPLNVAELENWQNYLDFIEREGDFNKL
SNICCIICLIGKSLGEATFXNGKCTETKAWTFDLVSLRCVLVFLTIYVSGNGGPIIFEGP
LCSNNGVVKLYERCLIACANYPEYWIRYVLCMEASGSMDLANNALVRATQVFVKRQPEIH
LFAARFKEQNGDIEGAQAAFHLVHSEISPGLLEAIIKHANMERRLGKLEDAFSFYEQAIA
IEKGKEHSQTLPMLYAQYSRFSYLVSGNAKKAREILTGALDHVHLSKPFLEALIHFETIL
PPPRQIDYLQSLVDKFISPNSDGSAADKEDLSSIFLEFLSLFDDVQSIKEAEDRHAKLFL
PHRPMLELRKRHAEEFLSSDKTKLVKSYSGASPGQSLMGAYPNAQNQWPAGYGAQPQTWP
PTTQAQAQAQPWTSGYSQQAAYGAYSSYGSNYAAPQVPTSVPQIASYGAYPTTTYPMQSF
PQQSYAQPTAATTLTPAQQPPPAAAAAAPQAYYGGPYY
NT seq
2637 nt
NT seq
+upstream
nt +downstream
nt
atgggagatagtgaagcagtagttgccgactcatcagcaatgatggattatacttcagca
gcctataattctgctggttctggcgcttactcctcccaggctactggatatcctactgct
tctggtggtcatccaaattctgctggtcaagaaggtcaaagcagtgaaatgtatgacggt
aagccagctggtggagcaacagatgagactgctgttgcagttggaaatagggcagcagat
gcatcaaaagctgctggttgtaattatcctctaaatggaaatgttgttaatgcagcagga
aatgcaaccacagttgagaatggaaatgcttttgataatttaggtggtgcttctgccgca
ccagagtttgtggatggttctgcaccaaccatttctgctgaagaagaacgtttatggagt
attttgagagccaattcattggattttaatgcttggactgcattgatagaggaaacagag
aaggttgcagagaacaatatactgaaaattcggaaggtttatgatgctttcttggctgag
tttcctttgtgttatggttattggaaaaagtatgcggatcatgaagcacgcataggctcc
atggacaaagttgtggaggtctatgaaagagcagttcagggagtgacatattctgtggat
atctgggtgctatattgtgcttttgccattgaaacatatggagatccagagaccatccga
aggctttttgaacgaggattagcatatgttggaactgattatctatctttccctctttgg
gataagtacattgaatatgaatacatgcaccaggagtggagtcgccttgctgctatttat
actagaatatttgagaaccctaatcaacagctagataggtatttcaacagtttcaaagag
ttggctggaagtcgacctttgtcagaattaggaactgctgaggaagctgctgccaatgta
tcaggtccagtttcagaggctgatggcctagtcaatgaaagagaggttcatcctgatgct
gcagaacaaatgcagaagcctctaactgctggctcaacagatgcagaagagttggagaag
tatgttgccattagagaagagctatataaaaaggccaaagagctcgattctaagatcatt
ggttttgaaacagctatcagaaggccttactttcatgtgcggcccctcaatgttgctgag
cttgaaaactggcagaactacctggactttatagaaagagagggtgacttcaataagtta
agtaacatctgctgcatcatttgccttattggcaaatcgttgggtgaagcaactttttaa
aacgggaaatgtactgagactaaagcatggaccttcgatttggtttctttgaggtgtgtt
cttgtcttcctaaccatttatgtgtcaggcaatgggggtcccatcatatttgaggggcct
ctctgttccaacaatggagtggtcaaattatatgaaaggtgccttatagcatgtgccaat
tatcctgagtactggatacgatatgttttatgtatggaagccagtggaagcatggatctt
gctaataatgcacttgtgcgtgctacgcaagtcttcgtcaagaggcaaccagagatccat
ctttttgcggctcgattcaaggagcagaatggggacatagaaggtgctcaagctgcgttt
caccttgttcacagtgaaatatcaccaggtcttcttgaagcaattatcaagcatgcaaat
atggaacgccgtctggggaaactggaagatgccttctctttttatgaacaagctattgcc
attgaaaaaggaaaagagcattctcaaacattaccaatgctgtatgcacaatattctaga
ttttcttacttggtttctggaaatgcaaagaaggccagggaaattttaactggagcactt
gaccatgtccacctgtctaaaccattccttgaggccttaatacattttgaaacaatttta
ccaccaccaaggcagattgattatttacagtcattggttgacaagtttatatccccaaac
tcagatggcagtgctgcagacaaggaagacctatctagcatatttttggagttcttgagt
ctctttgacgatgtacagtccattaaagaggcagaagatcggcatgctaagctattttta
cctcataggcccatgttggaattaagaaaacgtcatgctgaagaatttttatcttcagat
aagacaaagcttgtgaaatcttactctggtgcctcacctggccagtctttgatgggtgcc
tatccaaatgcacaaaaccagtggccagctggttatggggcacagcctcaaacttggccc
cctactacacaggcacaggcacaggcacaaccatggacttctggctacagccaacaggct
gcatatggtgcatatagcagttatggtagcaattatgcagctccacaagtgcccacatca
gttccacaaattgccagttatggtgcttacccgactacaacatatccaatgcagagcttt
cctcagcaaagttatgctcaaccaactgctgccacgactttaaccccagcgcagcaacct
cctcctgctgctgctgctgcagctcctcaggcttattatggtggaccttactattga
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