Gossypium hirsutum (upland cotton): 107952909
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Entry
107952909 CDS
T04793
Name
(RefSeq) spastin
KO
K13254
spastin [EC:
5.6.1.1
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107952909
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ghi04812
]
107952909
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.1 microtubule-severing ATPase
107952909
Membrane trafficking [BR:
ghi04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
107952909
Cytoskeleton proteins [BR:
ghi04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Microtubule severing proteins
107952909
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
Vps4_C
AAA_5
RuvB_N
NPHP3_N
AAA_22
AAA_14
AAA_16
Mg_chelatase
TIP49
DUF815
AAA_2
IstB_IS21
AAA_25
RNA_helicase
MIT
nSTAND3
AAA_24
Guanylate_kin
TniB
DUF4368
Motif
Other DBs
NCBI-GeneID:
107952909
NCBI-ProteinID:
XP_016743603
UniProt:
A0A1U8NZT7
LinkDB
All DBs
Position
A07:complement(34973093..34978068)
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AA seq
483 aa
AA seq
DB search
MSFIKDIIDSLSSIISTDSTPYESTQNPSSSTCQNMEGIAGNERTAYKLKGYFDLAKGEI
DKAVRAEEWGLVDDALIHYKNAQRILIEASSTATPSYIGSSEQEKVKSYRQKISKWQGQV
SERLQVLSRRSGSTSANKNTLTHAQTAAVSPRASNSRRDVLQKSPRNPVVRNQVDKVGSS
KFSQESGNGYESKLVEMINTAIVDRSPAVKWDDVAGLEKAKQALMEMVILPTRRRDLFTG
LRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMVA
ISKQPSVIFMDEIDSVMSTRLANENDASRRLKSEFLIQFDGVASNPNDLVIVIGATNKPQ
ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQEFSLPGWDLERLVRETEGYSGSDLQ
ALCEEAAMMPIRELGSNILTVKANQVRPLRYEDFQKAMSVIRPSLNKSKWEELEQWNQEF
GSN
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcatcaaagacataatcgactctctaagctcaatcatctcaaccgatagcacg
ccatatgaatcaacgcaaaaccctagttcttccacgtgtcagaacatggagggaatagct
ggaaacgaacgcaccgcgtataagctcaaaggatacttcgatttggccaaaggagagatc
gacaaagcagttcgagcggaagaatggggtttagtagacgacgccctgattcactataaa
aatgcacagcgaattctgatcgaggctagctccactgccacaccttcatatatcggctct
agtgaacaagaaaaggtgaaatcgtataggcaaaagatatcgaaatggcaaggtcaagta
tctgagagactacaggttttaagtcgccgatcaggtagcacatccgcgaacaagaacacc
ttaactcatgcacaaactgctgcagtttcaccaagagcatcaaattctaggagagatgtg
ttacaaaagtctcctcgtaacccggtggtgagaaatcaggttgataaagttgggagttcg
aaattttctcaagaatctggtaatggttatgagtcgaagttggttgaaatgatcaataca
gcaatagttgatagaagccctgctgttaaatgggatgatgttgctggcctagaaaaggct
aagcaagcactaatggaaatggttattctgccaactagaaggcgggacttgttcactgga
cttagaaggccagctagaggtctgcttctttttggtccacctggtaatgggaagaccatg
cttgccaaagcagttgcatctgaatcacaggcaacattcttcaatgtttctgcatcctct
ctaacatctaaatgggtaggagagggtgaaaagcttgttcggactctcttcatggttgct
atatccaaacagccatctgttattttcatggatgaaattgatagtgtcatgtcaaccagg
ttggcaaatgaaaatgatgctagtagacggttgaagtcggagttcttaatccagtttgat
ggagtggcatccaatcctaatgatttagtaattgtcattggtgccactaataagcctcag
gaattggatgatgctgttcttagaagattggttaagaggatatatgtacctcttccagat
gaaaatgttagaagactgcttctaaaacacaaactcaagggtcaagaattttccttacct
ggttgggacctagaacgacttgtgagggagacggaagggtattctggaagtgatctgcaa
gcgctatgtgaagaagcggctatgatgccaattagagagcttggttcaaatatacttact
gtgaaggcaaatcaggtgagacctctaagatatgaagactttcagaaggcaatgtctgtt
atcaggcccagtttaaacaaaagcaagtgggaagaacttgaacaatggaatcaggagttt
ggctccaactaa
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