Gossypium hirsutum (upland cotton): 107952992
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Entry
107952992 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107952992
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
107952992
microRNA pathway
RISC loading complex
107952992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
Helicase_C
DND1_DSRM
PAZ
DEAD
ResIII
Dicer_dsRBD
Dicer_PBD
SWI2_SNF2
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
107952992
NCBI-ProteinID:
XP_040973845
LinkDB
All DBs
Position
A07:29088516..29098641
Genome browser
AA seq
1951 aa
AA seq
DB search
MEEEGRVSGGNGSSYWLDACEDISCDLISDFVDFDAPIVQDSVDNTSNQDFFGGIDHILD
SFKNGGGLPPVGSNGDSSAVNGNGIYDPVAGDGWSPNELSGVSKDLPDNSVPPSNGVEKK
IGSKGQEKSCDDSNSSLFDYSNKDNGVHRDDKRSSESRDRGLDSEERCRKRARANGCKSD
RQYSSRGQYYPRDRERCSSRKRVRDWDEIDRRDREHVRRREHYYGGNRRDGREREPRGYW
ERDRSGSNEMVFRLGTWEADRQREGKVAYDKTPECNGKMEKKVEQPKEKLLEEQARQYQL
DVLEQAKRKNTIAFLETGAGKTLIAVLLMKSISDDLQKHTRKMLSVFLVPKVPLVYQQAE
VIRERTGFQVGHYCGEMGQDFWDARRWQREFESKQVLVMTAQILLNILRHSIIKMESINL
LILDECHHAVKKHPYSLVMSEFYHTTPKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNL
ESKLDSVVCTIKDRKELEKHVPMPSEVVVEYDKAASLWSLHEQIKQMEATVEEAAQSSSR
RSKWQFMGARDAGAKEELHQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQ
SFLTALQNDERANYQLDVKFQESYLNKVVSLLQCQLSEGAVTEKDMNNAEAENCNAQDGT
NTDEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQSLIKILLKYQHTEDFRAIIF
VERVVAALVLPKVFAELPSLSFIRCASLIGHNNSQEMRTGQMQDTIAKFRDGRVTLLVAT
SVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHATFLRNAR
NSEETLRKEAIERTDLSHLKDTSRLISVDMVPGTVYQVESTGAIVSLNSAVGLVHFYCSQ
LPSDRYSILRPEFIMKKHEKPGGPTEYSCKLQLPCNAPFEELEGPMCSSMRLAQQAVCLA
ACKKLHEMGAFTDMLLPDKGSGEEAEKVDQNDEGDPLPGTARHREFYPEGVADILQGEWI
LSGRDCVGDSKIHRLYMYTIKCVNNGSSKDPFLTKVSDFAVLFGKELDAEVLSMSVDLFI
VRAMITKASLVFRGSIDITESQMASLKNFHVRLMSIVLDVDVDPATTPWDPAKAYLFVPV
VGDKFVDPIKEVDWDLVDNIITTNAWSNPXQRARPDVFLGTNERTLGGDRREYGFGKLRH
GLAFGHKPHPTYGIRGAVAPFDVVKATGVVPSRDTIEVQGDWTKGNLIMADGVARAEDLV
GRIITAAHSGKRFYVDTICYDMSAETSFPRKEGYLGPVEYSSYADYYKLKYGVELSYKQQ
ALIRGRGVSYCKNLLSPRFEHSEGESEEALDKTYYVFLPPELCFVHPLPGSLVRGAQRLP
SIMRRVESMLLAIQLKHIIQFPVPASKILEALTAASCQETFCYERAELLGDAYLKWVVSR
FLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKGLQSYIQADRFAPSRWAAPGVLPVFD
EDTKDGDMSLFDQEHATADVLPVKVLGDGFEDEDMEDGEIESDSSSYRVLSSKTLADVVE
ALIGVYYVEGGKHAANHLMKWIGIQVESDPDDMDSIVKPSNVPESILRSVNFEALEGALN
IEFKNRALLVEAITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDL
RAAAVNNENFARVAVKHQLHVHLRHGSSALEKQIRDFVKEVQDELLKPGFNSFGLGDCKA
PKVLGDIVESIAGAIFLDSGRDTAVVWRVFQPLLHPMVTPETLPMHPVRELQERCQQQAE
GLEYKASRSGNLATVEVFIDGVQVGVAQNPQKKMAQKLAARNALAVLKEKETAEAKENCE
ENGKKKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVKVNTTDRGWT
DECIGEPMPSVKKAKDSAAVLLLELLNKWYS
NT seq
5856 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagaaggtagggtttctggtggcaatgggtcatcttactggctggatgcttgt
gaggacatatcatgcgacttgattagcgattttgttgatttcgatgctcctatagttcaa
gactccgttgacaatacttccaatcaagatttctttggaggaattgatcacattctcgat
agcttcaagaacggcgggggacttcctccggtgggaagtaacggtgatagctctgccgtc
aatggaaatggaatttacgaccccgttgctggagatggatggtctcccaatgagctctct
ggggtctccaaggatttacctgacaactcagttccgccatctaatggagttgaaaagaag
attggaagcaaagggcaggaaaaaagctgcgatgatagtaattccagtttatttgattat
tctaataaggataatggagttcatcgagacgataaaaggtcatccgagtcgagagatagg
ggtttagatagtgaagagaggtgtagaaagagggctcgtgcgaatggctgcaagagtgat
aggcagtattctagtagaggtcaatattatccccgggatagggagagatgttcttctagg
aaaagggttcgagattgggatgaaattgatcggagagatagagagcatgttaggagaaga
gaacattattatggtggcaataggagggatgggagagagagagaaccaaggggttattgg
gagagggatcggtcagggtccaatgagatggtttttaggttgggtacttgggaagcagat
cggcaaagagaagggaaggtggcttatgacaaaactcccgagtgcaatggaaagatggag
aagaaagttgagcagccgaaggaaaaactcttggaggagcaagctcgtcaatatcaattg
gatgttcttgagcaggcaaagaggaaaaacacaattgcatttcttgaaaccggggcaggg
aagaccctcattgctgttctcctcatgaaaagtatttctgatgatttacaaaagcacacc
agaaaaatgctctctgtctttttggttcctaaagttccactagtttatcagcaagctgaa
gttattcgcgagagaactggtttccaagtaggtcattattgtggggagatgggtcaagat
ttttgggatgctcgtaggtggcagcgcgagtttgaatcaaagcaggttttggttatgaca
gctcaaattctgctgaatattttgagacacagcataattaaaatggaatcaatcaatctc
cttatcctggacgagtgtcatcatgctgtgaagaaacatccgtattcactggttatgtct
gaattctatcatacaacaccaaaggagaagagaccttctgtttttggaatgaccgcttct
cctgttaacttgaagggtgtttcaagtcaagttgattgtgctataaaaattcgtaatcta
gaaagcaaactggattctgtagtctgtaccatcaaagaccgcaaggaactcgagaaacat
gtgccaatgccttcagaagttgtggtagagtatgacaaagcagccagtttatggtccctc
catgaacaaataaaacaaatggaagcaacagttgaagaagctgcacagtcaagctctaga
agaagtaaatggcagttcatgggagctagagatgcaggagccaaggaagagcttcaccaa
gtttatggtgtatctgaaagaacagaaagtgatggagctgctaatttgatacaaaagttg
agggctgttaattatgcactgggtgaactgggccaatggtgtgcttataaggttgcacaa
tcttttctgacggctttgcaaaatgatgagagggcaaactaccagcttgatgtcaagttt
caagaatcttacctaaacaaagttgtttctctcttacaatgccaattatcagagggagct
gttactgaaaaagacatgaataatgcagaagcagagaactgtaatgctcaagatgggacc
aatactgatgagattgaggaaggagagctccctgacagtcatgttgtctctggtggagag
catgtggatgtgataattggagcggctgtagcagatggaaaagtgaccccgaaagtacag
tcattgattaaaatacttctgaagtatcagcacacagaggattttcgagcaatcatcttt
gttgagcgagttgtggctgctttagttcttcctaaggtttttgcagagcttccgtctctg
agtttcatcaggtgtgcaagtttaattgggcacaacaatagtcaagaaatgcggactgga
caaatgcaggatacaattgctaaattccgtgatggtcgtgtgacattgttagttgcaact
agtgttgctgaggaaggattggatattcggcaatgcaatgttgtcattcgatttgatctt
gcaaaaactgttttggcatacattcagtctagaggtcgtgcaaggaagcctgggtcagat
tacatcttgatggttgagagaggaaatttatcgcatgctacattcctaaggaatgctagg
aatagtgaggagaccttgcggaaagaagcaattgagagaactgaccttagtcatttgaag
gatacttcgaggttgatttcggtggatatggtaccaggtacggtgtaccaggttgaatca
actggtgccattgttagcttgaattctgctgttggactcgtccatttttactgctctcag
cttcctagtgacagatattcaatacttcgtcccgagtttattatgaagaagcatgagaag
ccagggggtccaactgaatattcttgcaagcttcagctcccctgtaatgcaccatttgaa
gagctcgagggtcccatgtgcagttctatgcgtcttgcccagcaggctgtatgtttggct
gcttgcaagaagctccatgagatgggagcatttactgatatgctcttgcccgataaagga
agcggggaagaagcagagaaggttgaccagaatgatgaaggagacccacttcctggaact
gctaggcatagagaattctatccagaaggtgtagcagatatactccagggagaatggatt
ttatctggaagagattgtgttggtgactccaaaatacatcgtctgtacatgtatactatc
aaatgtgtaaataatggctcttcaaaagatccattcttaactaaagtctcagattttgca
gtactttttggcaaagagctggatgcagaggtgttatcgatgtcggtggatctatttatc
gttcgagccatgataacaaaggcatctcttgtcttcaggggatcaatagatataactgaa
agtcagatggcatcccttaaaaattttcacgtaagattgatgagcattgtattggatgtg
gatgttgatcctgccactactccttgggatcctgccaaggcatatttgtttgtccctgtg
gttggcgataagtttgtagatcctataaaagaagttgattgggatttggtagataatata
atcactacaaatgcgtggagcaatcccnttcagagagctaggccagatgttttccttggg
acaaatgagaggacacttggtggtgacagaagggagtatggatttgggaaattgcgtcat
ggcctggcttttgggcacaaacctcatcctacttatggtatcagaggagccgtagcccca
tttgatgttgttaaagctaccggggtggttcctagtcgtgatacgattgaggtacaaggg
gattggaccaaaggcaatttgataatggctgatggtgttgcacgtgcagaagatcttgtt
ggaagaataataacagccgctcattcggggaagaggttttatgtagatacaatatgctat
gacatgtcagcagagacctcctttccaaggaaagagggctatcttggtcctgtcgagtac
agctcatatgccgattactataagctgaagtatggtgttgagttgagctacaagcaacaa
gctttgataagaggtcgtggtgtttcatactgcaagaatctcttatctcctcgatttgag
cactcagaaggtgaatcggaggaggcacttgacaaaacatactacgtgtttcttccgcct
gagctatgttttgttcatccacttcctggatcacttgttagaggtgcccagaggttgccc
tctattatgaggagggttgagagcatgcttcttgcaattcaacttaagcacataatacaa
tttccggtccctgcttcaaagattttggaagctttgactgctgcttcgtgtcaggagaca
ttttgctatgaaagggctgagcttcttggggatgcttacttgaaatgggtagtcagtcgt
tttctgtttcttaaatatccacagaaacatgaaggtcaactgaccaggatgagacaacaa
atggtgagtaacatggtattgtatcaatatgcattaaataagggacttcaatcatacatc
caagcagatcgctttgcaccatctagatgggctgctcctggggtgttgccagtctttgat
gaggatacaaaagatggtgacatgtccttatttgatcaagaacatgcaactgctgatgtt
ttaccagtaaaagtacttggtgatgggtttgaagatgaggatatggaagatggtgagatt
gagagtgactcaagttcttatagagtcctctctagcaagaccttagcggatgtggttgaa
gcactgattggagtttattatgttgaaggtggcaagcatgcagctaaccacctcatgaaa
tggattgggatccaggtggagtctgatcctgatgatatggactctatagtgaagccatcg
aatgttccagaaagcatactcaggagtgtaaattttgaggccttagaaggtgcattgaac
atcgagtttaaaaatagggccttgttggtagaagctattactcatgcttcacgcccatca
tcgggagtatcctgctaccagcgtttggagtttgttggtgatgcagtcttggatcatctt
atcacaagacatttgttttttacatacaccaatttgcctccaggtcgcttgactgatttg
cgtgctgctgccgtaaacaatgaaaactttgcacgtgttgctgtaaagcatcagttgcac
gtgcatcttcggcatggatcaagtgcccttgagaaacagattcgggacttcgtgaaggaa
gttcaggatgagttattaaagccaggtttcaactcttttggattgggagattgcaaagca
ccgaaagttcttggagatattgttgaatccattgctggtgccatttttcttgacagtgga
cgtgacactgcagttgtctggagggtttttcaacctctgttgcatcccatggtgactcca
gagacattgccgatgcatcctgtccgggaactacaagaacgatgccagcaacaagctgaa
ggcttggaatacaaagccagtcgtagtggcaatttggccactgtggaggttttcattgat
ggggtccaggttggagttgctcagaatccccaaaagaagatggcacagaaactagctgca
aggaatgcacttgctgttctgaaggagaaagaaacagctgaagctaaggagaactgtgag
gagaatgggaaaaagaagaagaatggcaaccagacatttaccaggcaaacattgaatgat
atctgcctgcgtcgaaactggcctatgcccttctatcggtgtgtgaatgaagggggccct
gcccatgcaaagagatttacttttgctgtcaaggttaacaccactgacagggggtggacc
gatgaatgcataggtgagccaatgcctagtgttaagaaggccaaggactcggccgctgtg
cttctcttggaacttttaaacaaatggtattcatga
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