Gossypium hirsutum (upland cotton): 107953052
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Entry
107953052 CDS
T04793
Name
(RefSeq) ATP-dependent RNA helicase DEAH13
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ghi03009
]
107953052
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107953052
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
90S particles
Helicases
107953052
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DHX37_C
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
nSTAND3
ATPase
Sigma54_activat
AAA_19
AAA_23
Motif
Other DBs
NCBI-GeneID:
107953052
NCBI-ProteinID:
XP_016743764
UniProt:
A0A1U8P0N1
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All DBs
Position
A07:complement(26585262..26593430)
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AA seq
1320 aa
AA seq
DB search
MENSCPPVELKTGQDALSLEASDSNALILPTKRSKKRRGKDQELQRVKEKQNPKLSKSQI
RKLKKIEEEKEKELFLSKSIEALEKYKIPEDVYSLLQSSKTIGQAETTREKRRTAIQFSK
VGLEVPQCAKSSKVGDGDLLSSSEPEIELEELNPRKGISQNQIEQSIKVEKEVAKHAGDS
LASSQKLAFCKDLSASCNYVDTLPTMEAFCKNNDAPLEEGMETYFPKLPVDGGRKSTMSM
GPLSAPTVVVHVSRPDEIENKRKDLPIVMMEQEIMEAINENSTVIICGETGCGKTTQVPQ
FLYEAGFGSNQSTIRSGVIGITQPRRVAVLATAQRVAFELGLHLGKEVGFQVRHDKKIGG
RCSIKFMTDGILLREVQNDVLLKRYSVIVLDEAHERSLNTDILIGMLSRVIRLRQDLYEK
QQQMILSGQSISPENMIYPLNLVLMSATLRVEDFISGRRLFCVPPPVIEVPTRQYPVTIH
FSKRTELVDYIGQAFKKVMSIHKRLPPGGILVFVTGQREVEYLCRRLRKASKGVITNISK
GDKRTEAAPNSQISSVEDINMKDISDAFETNEDSAHQKTDRLSSYDEDQYDYHEDDSDAS
YDSETDSELETFDEDGNTLDKKSMENSGNLVDVLGGDGSLASLKAAFEALSGKNGLDSNP
EGQEAVSINPESSLEQHSAPIEKVSEGNRGLNTGALRVLPLYAMLPAAAQLRVFEEVKDG
ERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYNPTNGMETYEIQWISKASAAQRAGRA
GRTGPGHCYRLYSSAVFSNILPDFSCAEISKIPVDGVVLLMKSMGIDKVANFPFPTSPGP
TALVEAERCLKALEALDGSGRLTSLGKAMAHYPMSPRHSRMLLTVIQIMRRVKSYARANL
VLGYAVTAAAVLSSTNPFVIQYEESHNQTDEPKRDDGSNPLDSEKVLNKKEKSQKRKLKE
LAKMSRAKFSNPSSDTLTVAYALQCFELSESQVDFCNANALHLKIMEEMSKLRKQLLQLI
FNQNVHCDVGQDFLWTHGTMEDVEQSWRVASSKYPLLQNEEELLGQAICAGWADRVAKRI
RGVSRSSEGDRKVNTVRYQACLVTETVFLHRASSLSSSAPEFLVYSELLQTKRPYMHGAT
SVKSDWLVKYAKSYCTFSAPLTDPRPYYDPQTDEVYCWVVPTFGPHLWQLPMHNLQISSN
AHRATVFAYALLEGQVLPCLKSVKQFMSASPDIILKPESYGQSRVGNLLHKFKTWRIDSC
GQLRKILEDDSRALHSVILDWFQESFHKHFEMLWSEMLSEVLLDPQERFPKRLKRDKRKK
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atggaaaattcttgcccacctgtagagttgaagaccggacaagatgcattgagtttggaa
gctagtgacagcaatgctttaatcttgcctacaaaaagaagcaagaaaaggagagggaag
gatcaggaacttcaaagggttaaagagaaacaaaaccccaaactgagtaaatctcagata
agaaagttgaagaagatagaggaagagaaggagaaagaactttttctatcaaagagcatt
gaggcattggagaaatacaagattccagaagatgtatattccttgcttcagtcctcaaaa
actatcggtcaggccgaaacaacacgggaaaaacggaggacagctattcaattttctaaa
gtaggtttagaagttccacagtgtgccaaatcttctaaagtgggagatggtgatcttttg
tcttcatcagaacctgaaattgagttggaggaattaaacccgaggaagggtattagccaa
aatcagattgagcaatccatcaaagtagaaaaagaagttgcaaaacatgcgggtgactct
ttggcatcttctcagaagctggctttttgtaaggacctatctgcaagctgcaattatgtt
gataccttaccaactatggaggctttctgcaagaacaatgatgcacctttagaagaaggc
atggaaacctattttcctaagttgccggtagatggtgggagaaaaagcaccatgtctatg
ggacctctttctgccccaactgttgtagtgcatgtttcaaggccagatgagattgagaac
aaaaggaaggatcttccaatagtcatgatggagcaggaaataatggaggctataaatgag
aattctactgtaattatttgtggagagactggttgtggtaaaaccacacaagttccacag
tttctttatgaagctggatttggttcaaaccagtctaccattagaagtggtgtcattggt
attactcaaccccgccgtgttgctgtccttgctactgctcagcgagttgcctttgagctt
ggccttcatctaggtaaagaagttgggtttcaagttaggcatgacaagaagattggaggc
agatgctctatcaagtttatgactgatgggattttacttagagaagttcagaatgatgtt
ctattaaagcgctactctgtcattgttctggatgaggctcatgagcggagcttgaacaca
gacatacttattggaatgctttctcgtgtaattcgacttcggcaggatttgtatgagaag
caacaacagatgattctttcaggacaaagtataagccctgaaaacatgatatatccatta
aaccttgttttgatgagtgctacactgcgagtggaagacttcatttctgggagaaggtta
ttttgtgttcctcctcctgtaatcgaggttcctactaggcaatatcccgtcacgattcat
ttctcaaagagaacagagcttgtggattatattggtcaagccttcaaaaaggtcatgtct
atacataagaggcttccgccaggtggcatacttgtttttgtcactggacagagagaagta
gagtacttgtgccgaaggttacgcaaggcttccaagggtgtgatcactaacatttctaaa
ggggacaaaaggactgaggctgctcctaactctcaaataagttcagttgaggacattaat
atgaaggatattagtgatgcatttgagactaatgaagactcagcccaccagaagactgac
aggttgagctcatatgatgaagatcagtatgattatcatgaggatgattcagatgcttct
tatgattcagagacggatagcgaactggaaacttttgatgaggatgggaacacattggat
aaaaaatccatggaaaatagtggtaacttggttgatgtgttgggaggggatggaagcctt
gcttcactgaaggctgcttttgaagctttgtctgggaaaaatgggttagattctaatcct
gagggacaagaggctgtctccatcaatccagagagcagcttagagcaacactctgctccc
attgaaaaagttagtgaaggtaatagaggcctcaatactggtgccctacgagttctacca
ctttatgccatgctacctgcagctgcacaacttcgtgtatttgaggaggtgaaggatgga
gagcggctcgttgttgttgccaccaatgtggctgaaacctctttaaccatccctggaata
aagtatgtggttgacactgggagagaaaaggttaagaactacaatcctaccaatggtatg
gaaacctatgagatccaatggataagtaaagcatctgctgctcaacgagcaggaagagct
ggaagaaccggtcctggccattgttatcgtctctattcttcagcagtctttagtaacata
ctgcctgatttctcttgtgctgagatatctaaaatacctgttgatggtgttgttcttctt
atgaaatccatgggcatcgataaggttgcaaatttcccattcccaacttctccaggaccc
actgcgttggttgaagcagagcgttgtctgaaagctcttgaagcacttgatggcagtgga
aggttgacatctctggggaaagccatggctcattatccaatgagtcctcgccactcaagg
atgctccttactgttatccagataatgagaagggtgaaaagctatgcccgggctaatctg
gttcttggatatgcagttacagctgctgcagttttgagctcgacaaatccttttgtcata
caatatgaagaaagccataatcaaactgatgaaccaaagcgggatgatggatctaatccc
ttagatagtgagaaagttttgaacaagaaagaaaaatcgcagaaaagaaaactaaaagaa
ttggccaaaatgtcacgagctaaattctctaatcctagtagtgatactctgacagttgct
tatgcattacagtgttttgagctttcagaaagccaagtggacttctgcaatgcgaacgca
ttacatctgaaaatcatggaggaaatgtcaaagctaagaaagcagcttcttcagttgatt
tttaatcaaaatgttcattgtgatgttggacaagatttcttatggactcatggaaccatg
gaagatgtagagcagtcttggagggttgcctccagtaagtacccacttttacagaacgag
gaagagctcttaggacaagctatctgtgctggctgggctgatagggttgccaaacgcatc
agaggagtttcaagatcgtctgaaggagataggaaggtaaatacagtcagatatcaggcc
tgcttggttacagaaaccgtctttctccatcgcgcttcatctctttcaagttctgctccg
gagttcttggtatacagtgaactattacagacaaagcggccatacatgcatggggcaaca
agtgtgaaatcggattggcttgttaaatatgccaagtcttattgcactttctctgctcct
cttactgatcctagaccttattatgatcctcaaacagatgaagtatattgttgggtggtt
cccactttcgggcctcacctatggcaacttccaatgcataatttgcagatcagtagcaat
gcacatcgagcgacagtatttgcatatgctttgcttgaaggtcaagttttgccatgccta
aagtctgtcaagcaattcatgtcagcttctcctgatatcattttaaagccggaatcatat
ggtcaaagtcgagtcggaaatcttttacataagttcaagacctggaggattgacagttgt
ggtcagttgagaaagatattggaggacgattcaagagcattacattcagtaattctagac
tggtttcaagaaagtttccacaaacattttgaaatgctttggtcagagatgctttctgaa
gtcctcctagatccccaagaacgttttcccaagagattgaagagagataaaaggaaaaag
tag
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