Gossypium hirsutum (upland cotton): 107953138
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Entry
107953138 CDS
T04793
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
ghi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107953138
09124 Replication and repair
03420 Nucleotide excision repair
107953138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107953138
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107953138
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
107953138
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
107953138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
107953138
NCBI-ProteinID:
XP_040973699
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All DBs
Position
A07:complement(22004745..22012153)
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AA seq
598 aa
AA seq
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MASTHVTKRAKYKTTIKDPGTPGTLRMTFEKILFVPHNPKSAGKLDVEFRYIKGKKHTKE
GSNKPPWLNLTNNQNGSFIFEFENYSDLQECRDFVGKVLAKGGEVSEKPTVAYPDEQLSA
AEMELRIKLLQEDSELQKLHKQFVLSGVLTETEFWATRKKLLDREASKKTKQRLGFKSAM
ISDIKPSTDGRTNKVTFNLTPEVILQIFAEKPAVHRAFLSYVPNKMSERTFWTKYFRAEY
LHSTKNSIAAAAEAAEDEELAVFLKQDDILASEARKKIRRVDPTLDMEADEGDDYTHLPD
HGILREGSKEMTESQNELYKRSLSQDINRHAAVVLEGRAVDVELEDTKAVAEALAVKTEI
ESSNKGESDGDTSRERLDRLSRMTEIEDLQGPNTLPLAPLCIKDPRDYFDSQQANALRSS
GDALGEIEQIKCGLSTQEVYGSLRESISSIKAMGLKEPIVKPEVAHQVFDALTNSISNTK
YHIGKNPQESVLDRLPRKTKEELLHHWTSILELLKHFWASYPITTTYLYVKVNRLKDAMS
NIYPQLEEIKGSVPSELRHQVSLLVRPMHQALDAAIQHYEASMQKRSAQSGERPNGYV
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcactcacgtgactaagcgagctaagtataagaccacaatcaaggatccagga
actcccggtactcttagaatgacgtttgagaaaattttatttgtgcctcataatcctaaa
tcagctggaaagcttgatgtggagtttcgatacattaaaggcaaaaagcatacgaaggaa
ggatcaaataagccgccatggcttaatcttactaacaatcagaatgggagtttcatcttt
gagttcgaaaattattcagatcttcaagaatgtcgagattttgtgggaaaagttcttgca
aagggtggagaagtttctgaaaaacctactgttgcatatcctgatgagcaactcagtgcc
gctgaaatggagctgcgaattaagttattacaggaagatagtgaactgcagaaacttcac
aagcaatttgtgctaagtggtgtcctcacagaaactgagttttgggcaacacgaaagaag
ttgttggatagagaggccagcaaaaagacaaaacagcggctgggtttcaaaagtgcaatg
atttctgacatcaaaccatcaactgatggtcggacaaacaaagtcacatttaatttgaca
ccggaggtcattcttcaaatatttgcggagaagccagctgttcaccgtgcattcttaagt
tatgttcctaacaagatgtcagaaaggactttctggacaaaatattttagagcagaatac
ctacatagtacgaaaaacagtattgctgctgcagcagaggctgctgaagatgaggaactt
gctgtatttctaaagcaggatgacatattggcaagtgaggcgcggaagaagatccggcgg
gttgacccaactctggacatggaggctgatgagggtgatgattatacacatcttccggat
catgggattttacgtgaaggtagtaaggaaatgacagaatcacaaaatgagctatacaaa
agatctctatcccaggatattaaccggcatgctgcggttgttcttgagggaagagctgta
gatgtggagttggaagacacgaaggctgtagcagaagcacttgcagtcaaaacagaaata
gaatcatcaaataagggagaatctgatggggatacaagccgtgagaggttagataggtta
tcaaggatgactgaaatagaagatcttcagggaccaaatactcttccactagcaccactt
tgcattaaggaccctcgagattattttgattctcaacaagctaatgcacttagaagttct
ggagatgcacttggtgaaattgaacaaataaaatgcggtttgagcacccaggaggtgtat
ggttctttaagggagtccatctcatcgattaaagctatggggttgaaggagcctattgtc
aaacctgaagttgctcatcaagtttttgatgctttgaccaatagtatctccaacaccaaa
tatcatattgggaaaaatcctcaagagagtgttctggacagacttccgaggaaaactaag
gaggagctattgcatcattggacatcaatccttgaactactcaaacatttttgggcatca
tatcctatcaccaccacttacctctatgtgaaggtaaacagattaaaggatgccatgtca
aatatctatccacagctagaggagattaagggatctgtcccatcagagcttcggcatcag
gtttccctccttgttcgtccaatgcatcaggctctagatgctgctattcaacattatgaa
gcaagcatgcagaagagatccgcacaaagtggagagagaccaaacggatatgtgtag
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