Gossypium hirsutum (upland cotton): 107953168
Help
Entry
107953168 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: protein SMG7
KO
K14409
protein SMG7
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107953168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107953168
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
107953168
mRNA cycle factors
Common to processing body (P body) and stress granule
107953168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
107953168
NCBI-ProteinID:
XP_040973739
LinkDB
All DBs
Position
A07:23654895..23661362
Genome browser
AA seq
980 aa
AA seq
DB search
MMIVQMDKMSSPSSRERAQRLYEKNIELENNRRRSAQARVSSDPNAWQQMRENYEAIILE
DHAFSEQHSIEYALWQLHYKRIEELRAHYSAVLASAGSNTPQGVKVSQRPDRLTKIRLQF
KTFLSEATGFYHDLILKIRAKYGLPFGYFSDDLERQTVMDKNGKKSADIKKGLVSCHRCL
IYLGDLARYKGLYGDGDSKSREFVAASSYYLHAASIWPSSGNPHHQLAILASYSGDELLA
VYRYFRSLAVDNPFLTARDNLIVAFEKNMYMTMVVLNGCIFVCRIAYLXCQDSVGQGAWS
ALSGKGRVKVGAKLASKDSNMELSTAKEKVSRVQDTFKLFSIRFVRLNGILFTRTSLETF
ADVLTLVSRDLCELLSSGPEEELNFGTDAAENSLLFVRLVSILIFTVHNLKRENEGQTYA
EILQRAALLQNAFTAVFELMGHVVERCSQLQDVSSSYTIPAILVFVEWLACCPDVAVASS
AVDEKQSITRSHFWKHCISFLNKILSIRPMCIDDDEDETCFFNMSRYEGETENRLALWED
FELRGFLPLVPAHTILDFSRKHSFVSDGSKEKKARIRRILAAGKALANVIRVDQKTVCFD
SKAKKFLIGVEPSKDVTFSSSTPLVTNGIEHETPFEKTVNVGNVLPITQPITVEEEDDDD
EVIVFQPVVSEKRTEVISPKWPHPKSLKLNQSSSAGDLKFYGSAVSAPLDSLNQHNIFGA
SPMPVSAGSILPQYLQPVQMDASGWSVEETMSLVNGLNGLTMLEDGHLKKLDMQENVGLC
PATHSIAIQQPISSGGMYYCQTKVPEPVMPSRIDAVVSSRVTGDALSVKTTSALQIGMRK
NPISRPVRHLGPPPGFSPVPLKPPSESVPASDLENTLMDDYRWLDGYQLSSSHADTLYVN
KSSNDVTGTVSFPFPGKQVPMVQFQMEKQKGWQDYDTLEHLKIQHEQKLQQQQIMNGNQQ
FTSLPEQYKGPSVWTSRYFV
NT seq
2943 nt
NT seq
+upstream
nt +downstream
nt
atgatgatagtgcagatggataaaatgtcttctccttcatccagggagcgcgcacagcgt
ctttatgagaagaatatagagctggaaaataaccgtcggagatcagctcaggcacgagta
tcttcagaccccaatgcctggcagcagatgcgcgagaactatgaggcaataattcttgag
gaccatgctttttctgagcagcacagtattgaatatgcattgtggcagttacattacaag
cggattgaagagctaagagcacattatagtgctgtcctagcttctgcaggatcaaataca
cctcaaggtgtgaaagtttctcaacgacctgaccggcttacaaaaataagattgcagttt
aagacattcctttctgaggcaacaggattttatcatgatctgattttgaaaatcagagca
aagtatggacttccatttgggtacttttctgatgatttagaaaggcaaactgttatggac
aaaaatgggaagaaatctgctgacataaaaaagggtttggtatcttgtcaccgttgtttg
atatacttgggagacctagcacggtacaaaggattatatggagatggagactctaaatca
cgcgagtttgttgcagcttcaagttactatttgcatgctgcatcaatttggccatcaagt
gggaatccacatcatcagctagctatattggcatcctattcaggagatgagcttttggct
gtttatcgatattttcggagtttggctgtggataacccctttttaactgcaagggacaac
ttgattgtagcatttgaaaagaacatgtatatgactatggttgtattgaatggatgcatt
tttgtttgcagaatcgcatatctgtgatgtcaagactccgttggtcaaggagcatggtct
gcgttatcaggaaaaggtagggtgaaagttggagcaaaacttgcatccaaagattccaat
atggaattaagcactgctaaggagaaagtatcccgtgtccaggatacttttaagttattt
tccattcgatttgtgcgtctaaatggtattctttttacacgcacaagcctggagactttt
gcagatgttcttactctagtgtctcgtgatttatgtgagcttctctcttctgggccagaa
gaggaactgaattttggcactgatgctgctgagaattcacttctctttgttaggctggtt
tccattctcatatttacagttcacaatctaaagagggagaatgaaggtcaaacgtatgct
gagattctacagcgtgctgctctacttcaaaatgcattcactgccgtttttgagttgatg
ggacatgtagtagagagatgttctcaactccaggatgtttcttccagctacaccatacct
gctattctggtttttgttgaatggctagcttgctgcccggatgttgcagtggcaagctct
gctgtggatgagaaacagtcaattactagatcacatttctggaaacattgcatatcattt
ctgaataagatcttgtcaattagaccgatgtgcattgatgatgatgaagatgagacctgc
tttttcaatatgagcaggtatgaaggagaaactgaaaaccgtcttgccttgtgggaggac
tttgagttgagagggttcttgcctcttgttccagcacacaccattttagacttctcaaga
aagcattcctttgtaagcgatggcagtaaggaaaagaaagcccgtataagaagaatttta
gcagcagggaaggctctagctaatgtcattagggttgatcagaaaactgtttgttttgat
tcgaaagcaaagaagtttcttattggtgttgaaccttccaaagatgtcacattcagctct
tctaccccactcgtaacaaacggtatagagcatgaaaccccttttgagaagacagttaat
gttggaaatgtgctgccaattacccaacctataacggttgaggaagaggatgatgatgat
gaagtgattgttttccagccagttgtgagtgagaagagaactgaggtgattagtccaaaa
tggccccaccccaagtctttgaagcttaaccaaagtagttctgctggtgatctcaaattt
tatggcagtgccgtgtctgctcctcttgatagtcttaaccagcataatatttttggtgct
agtccaatgcctgtgtctgctggaagcattctccctcagtatctgcagcctgttcagatg
gatgcatctgggtggtcggtagaagaaactatgtctctggttaatggcttgaatggtttg
acgatgttggaggatgggcatttgaaaaaactggatatgcaagagaatgtgggcctttgt
cctgctactcattctattgctatccaacaacccatcagttctggtggtatgtactactgt
caaacaaaagtgccagaacctgtgatgccatccagaattgatgccgttgtgtcttctaga
gttactggtgatgccttgtctgttaaaaccacctcagctttacaaattggaatgcggaag
aacccaattagccgtccagttaggcatcttggtcccccaccaggttttagccctgttcct
ttaaagccaccaagtgaatctgttcctgcttcagatttggagaacacgctgatggatgat
tatagatggttggatggatatcagttatcatcgtctcatgcagataccctgtatgtcaat
aaaagcagcaatgatgtgactggaacagtaagctttcctttccctgggaaacaggttcca
atggtgcagtttcaaatggaaaagcagaaaggatggcaggactatgatactcttgagcat
ttaaaaattcaacatgaacagaagctacagcaacaacaaatcatgaatggaaaccagcag
ttcacctccctgcctgagcagtataaaggaccatcagtctggacaagtcgttattttgtg
tga
DBGET
integrated database retrieval system
