Gossypium hirsutum (upland cotton): 107953196
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Entry
107953196 CDS
T04793
Name
(RefSeq) protein SLOW WALKER 1 isoform X2
KO
K14549
U3 small nucleolar RNA-associated protein 15
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
107953196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ghi03009
]
107953196
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
107953196
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP15_C
WD40_Prp19
WD40
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
NBCH_WD40
Beta-prop_EIPR1
Beta-prop_EML
EIF3I
Beta-prop_SCAP
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD_LRWD1
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
107953196
NCBI-ProteinID:
XP_016743924
UniProt:
A0A1U8P139
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Position
D08:complement(5554828..5557456)
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AA seq
540 aa
AA seq
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MAEIRAEEPASTISKTFLIKPKLKSKPRSLPQTPESKYWSSFKSTKIPNLVSSISSLSFS
PSPPHLFAAAYSASVSLFSPLSLSDGDVSPSSTISSFSDVVSSISFRNDGLLLAASDLSG
LVQVFDVKTRTPLRRLRSHTRPVRFVKYPVLDKLHLLSGGDDAVVKFWDVAGESVVLDLM
GHKDYVRCSDCSPVSPDLFVTGSYDHTVKVWDVRVENSRSVLEVNHGKPVEDVIYLPSGG
LIATAGGNSVKIWDLIGGGRMVYSMESHNKTVTSICVGRVRKENDGAESMEDRILSVGLD
GYMKVFDFGNMKVTHSMRFPAPLMSVSFSPDCRTRVIGTSNGIIFAGRRKGKENVESGRV
GNVLGFESISESERRVLKPTYFRYFHRGQSEKPTEGDYLVMRNKKIKLAEHDKLLKKFRH
KDALVSVLSRKNRENVVAVMEELVARKKLLKCVSNLDSDELGLLLTFLSKNATMPRYSSL
LMGLTKKVIEMRVEDIRNSDALKGHIRNLKRSIEEELRIQHSLQEIQGIISPLLRIAGRR
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaatcagagcagaagaaccagcatcaacgatctcgaagaccttcttaatcaaa
cccaagctaaaatccaagccaagaagcctaccccaaaccccagaatccaaatactggtct
tctttcaaatccactaaaatccccaacctcgtctcttccatctcttccctttccttttcc
ccttcgccaccccaccttttcgccgccgcctactccgcttccgtttccctcttctccccg
ctctccctctccgacggcgatgtttcaccttcctccacaatctcctcattctccgacgtc
gtttcttctatttccttccgtaacgacggtctcctcttagccgcttccgatctctccggt
ctcgtccaggtcttcgatgtcaaaacccggaccccgcttcgtcgcctccggtctcatacc
cgtccggttcggttcgttaaatacccggttctcgacaagctccatttgctatctggtggt
gacgatgcggtcgttaagttttgggatgttgctggggagagcgtggtattggacttgatg
ggtcataaggattacgtacggtgcagtgattgtagtccggtaagtcctgatttgtttgtt
actggttcttatgatcatactgttaaggtttgggatgttagggtagaaaattcgaggtcg
gttttggaagtgaatcatgggaaaccagtggaagatgtgatttatttgccttctggtgga
ttgatcgcaactgctggtgggaattcagtgaagatatgggatttgattgggggagggaga
atggtttattcaatggaaagtcataataaaactgttacatcgatttgtgtaggaagggtt
aggaaggaaaatgatggggctgaatcaatggaggataggattctgagtgttggtttagat
ggttacatgaaggtttttgattttggtaatatgaaggttactcattcgatgcggttccct
gctcctcttatgtcagttagcttttcgccagattgtcgaactagagtgatcggaacatcg
aacgggattatatttgccgggagaaggaaaggaaaggagaatgtggagagtggtagagtg
gggaacgttttgggttttgagagtatatcggaatcggaaagacgggtattgaagcctacg
tattttaggtactttcatagagggcagagtgagaagccaactgaaggggattatttagtg
atgagaaataagaagatcaagttggctgagcacgataagttactgaagaagtttaggcat
aaggatgcactagtttccgttttaagtaggaagaaccgggagaatgtggttgccgtgatg
gaggaattggtggcaaggaagaagttactgaaatgcgtatcgaatttggattcagacgag
cttggtttattgttaacgtttttgagtaagaatgccacaatgccaaggtattctagtttg
ttgatggggttgacgaaaaaggtgattgagatgagggttgaagatatccgaaattcggac
gcattgaagggtcatattagaaaccttaagcggtcgatcgaggaagagctaaggatacag
cattcattgcaggaaatacagggtataatctctcctttattaaggattgctggtagaaga
taa
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