Gossypium hirsutum (upland cotton): 107953203
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Entry
107953203 CDS
T04793
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
107953203
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107953203
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
107953203
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
F-box
LRR_NXF1-5
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
107953203
NCBI-ProteinID:
XP_016743929
UniProt:
A0A1U8P144
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Position
D08:complement(5424450..5427097)
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AA seq
587 aa
AA seq
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MPKRLASSLSDEVLEHVFSFIQSEKDRNVVSAVCKSWYEIERWCRRKIFVGNCYAVSPEM
VIRRFPQVRSIELKGKPHFTDFNLVPDGWGGYVLPWITEMAGAYPWLDEIRLKRMVVTDE
SLELIAKSFKDFKVLVLASCEGFSTDGLAAIAASCKNLRELDLRESEVDDSSVHWLSHFP
ETYTSMVSLNISCLGSGEVSFSALERLVSRCPNLRSLKLNRAVPLDKTANILRLAPQLVE
FSACTYSAELRSDVFSNLAGAFSNCKELRSLSGFWDVVPDYLPAIYSVCSRLTSLNLSYA
TILSPDLIKLVSHCPSLQRLLVLDYIEDSGLEALASNCKDLQELRVFPSDPFDAEPNASL
TEQGLVAVSLGCPKLQSVLYFCRRMSNAALVTIAQNRPNLNRFRLCIIEPNTADYLTGEP
FDVGFGAIVEHCKALIRLSLSGLLTDCVFEYIGKYAKKLEMLSVAFAGDSDLGLHHVLSG
CESLRKLEIRDCPFGDKALLTNAAKLETMQSLWMSSCSVSFEACKLLSQKMPRLNVEVID
ERGPPDSRPENCTVDKLYIYRSVAGPRFDMPPFVWTKDEDLALRLSP
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagagattagcgtcttcgctctcagatgaggtgctggagcatgtattctcgttc
atacaatcggaaaaggatcggaacgtggtatcggcagtgtgtaaatcgtggtacgagatc
gagcggtggtgtcggaggaagatattcgtcgggaactgttatgctgtgagccctgagatg
gtgatcagacggttcccgcaagttagatccattgagttgaaagggaaaccgcacttcact
gacttcaatttggtaccggacggctggggcggttacgttttgccgtggattacggagatg
gctggcgcttacccttggctcgacgagattcggcttaaacggatggtcgtcacggatgaa
agcttggagcttattgctaagtcatttaaggatttcaaagtattggtgcttgcttcttgt
gaagggttttcaactgatggacttgctgccattgctgctagttgcaagaacctgagagag
ctggacttgcgagaaagtgaagtggatgattcgagtgtgcattggctcagccattttcct
gagacatacacatccatggtgtctcttaacatttcctgtttaggatctggtgaagttagt
ttctcggctttggagcgcctggtcagtagatgtccgaacctcaggtcccttaaactcaac
cgcgctgttccccttgataagactgccaacatattacgacttgcaccgcagctggttgaa
ttcagcgcttgcacctattcggctgagctacgttcagatgtcttctcaaacttggctgga
gctttttctaattgcaaggaactaaggagtttgtctgggttttgggatgtggttccggat
taccttccagctatttactctgtctgctctagattaacgtcactgaacttgagttacgca
actatactaagccctgatctcatcaagcttgtaagccactgtccgagtttgcagcgccta
ttggtacttgattatattgaagacagtggccttgaagcacttgcatctaattgcaaggac
ctgcaggaattacgggtttttccatcagacccgtttgatgcagaaccaaatgcatccttg
acagaacagggccttgttgctgtttctttgggttgtcctaagttacaatcagttttgtac
ttctgccgcagaatgtctaatgcagctctagtcacaattgctcagaaccgtccaaacttg
aaccggtttcgtctttgtataattgagccaaatacagctgattacctgaccggagagcca
tttgatgttggcttcggagccattgttgagcattgcaaggctctcatacggctttccctc
tctggtctcctcacagattgcgtgtttgaatatattggaaaatatgcaaaaaagctggaa
atgctatccgtggcttttgcaggagatagtgatttgggactccatcacgtgctttcaggg
tgtgaaagcctacggaaactagaaattagggactgccccttcggagacaaggctcttttg
accaatgctgcaaagctggagacaatgcaatccctttggatgtcttcctgctccgtgagt
ttcgaagcttgtaagctgctaagtcagaagatgcccaggctgaatgttgaagttatagat
gagaggggacctcctgattcaagacccgaaaactgcacagtcgataagctctatatctac
cgatctgtggctgggccaaggtttgacatgcctccttttgtttggacgaaggatgaagat
ttggctttgaggctttctccatag
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