Gossypium hirsutum (upland cotton): 107953742
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Entry
107953742 CDS
T04793
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107953742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107953742
03036 Chromosome and associated proteins [BR:
ghi03036
]
107953742
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107953742
Coactivators
SAGA/TFTC/STAGA complex
107953742
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
107953742
STAGA complex
107953742
TFTC complex
107953742
SAGA complex
107953742
SLIK complex
107953742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
Beta-prop_EML
Beta-prop_IFT122_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_EIPR1
Ge1_WD40
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
WD40_like
WD_LRWD1
Cytochrom_D1
Beta-prop_VPS8
LisH
PALB2_WD40
Pox_F17
Motif
Other DBs
NCBI-GeneID:
107953742
NCBI-ProteinID:
XP_016744625
UniProt:
A0A1U8P0H6
LinkDB
All DBs
Position
A07:complement(3987678..3993680)
Genome browser
AA seq
668 aa
AA seq
DB search
MENMQAVNSFVAAYLKKKGFKEAEQLLEDLQNKESTPIDFHNDPDLAKFIHHFSQSEDDV
AQYQDGYSKLRSWTYSSLDLYKHELLRVLYPVFIHSFMDLVAKGHLQEARTFFNAFHEDH
ELMHSRDLQKLEGVLSQSHLEEMEFARSLRQNKVNIKICQYSYDLLLQYLHKTQSTAMLG
VINEHINFQVTSVEPGSISDDTEVVTLIGSCQDAASLINQKEIHWGLLEDSLEERLEKEG
GLLSDSEKTEAENKEGDVDDSKKRSVEGGKQGASTKKLKKDKAVNATAKSARPEAKPTPA
APRVKPELTLPVMSTEVEQSILEDLRNRVQLSSVALPSVSFYTFLNTHNGLNCSSISQDG
SLVAGGFSDSSLKVWDMAKLGQQAGSSTLQGENDSTSSEHVAGPNGVKRSYTLFQGHSGP
VYSATFSPLGDFILSSSADTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASSSH
DRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDRTVRLWDVQSGECVRIF
IGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLMGHTSCVWSLAFSCEGTL
LASGSADCTVKLWDVTTSTKAPKNEDKSGNPNRLRSLKTLATKSSPVYSLRFSRRNLLFA
AGVLSKNV
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatatgcaggctgtgaatagcttcgtggcagcttatttgaagaagaaaggattc
aaagaagcggagcaattgttggaggatcttcagaacaaggagtccactccaatcgatttc
cacaacgaccctgatcttgctaagttcattcaccacttttcccagtcggaggatgatgtg
gcacagtaccaggatgggtatagcaaactgaggtcgtggacttatagttcactagattta
tacaagcatgagttgcttcgtgtgctttatccagtctttatacattcattcatggatctg
gtggcgaaaggacatttgcaagaggctagaaccttttttaatgcctttcacgaggaccat
gaactgatgcactcacgtgaccttcaaaagctggaaggcgttctttcgcagtctcatttg
gaggagatggagttcgctcgttctcttaggcagaataaagttaacatcaagatatgccag
tattcatatgaccttctgctgcaatatttgcataaaacacagtccactgctatgctgggg
gtcatcaatgaacatatcaatttccaagttacttctgtagaacctggttcgatttctgat
gatacagaggttgtaacactaattggaagctgccaggatgcagctagtctgataaatcag
aaagaaatacattggggattactagaagactccttagaagaacgtttggagaaggaagga
ggtttgctttcagattctgaaaagacagaagcagagaacaaagaaggggatgtagatgac
agtaagaaaagatcagttgaaggtggaaagcaaggtgcttcaacgaaaaagttgaaaaag
gacaaagctgttaatgcgacagcaaaaagtgctcgccctgaggctaaacccacccctgct
gcaccacgagtcaagccagagctcactttgcccgtaatgtctacagaggtagaacagtct
atacttgaggacttaagaaaccgtgtacagttgagtagcgttgcattgccatctgtcagc
ttttatacgttcctcaacacgcataatggtttgaactgttcatcaatatcccaggatgga
tctttggttgctggagggttctcagactcatcactgaaggtttgggatatggcaaagctg
ggccaacaagctggtagttctactttgcagggtgaaaatgattctacttcaagtgaacat
gttgcaggaccaaatggtgtgaaaagatcctatacattgtttcagggtcattcaggacca
gtttattcagccacctttagtcctcttggtgattttattctttcctcttcagcagataca
acaattcgcttgtggagcacaaaactaaatgcaaatcttgtttgctacaagggtcataat
tatcctgtatgggatgttcagtttagtcctgtaggacactattttgccagctcttcacat
gatcgaacagcaaggatttggtcaatggatagaatacaacctttgagaataatggcagga
cacttgtctgatgttgactgcgtgcaatggcatgccaactgcaactatattgctacaggc
tctagtgacagaacagtaagattgtgggatgtacaaagtggagaatgtgttcggattttc
attggtcataggagtatgatattgtcactagcaatgtcacctgacggccgctatatggct
tctggtgatgaagatggcacaatcatgatgtgggacctttcaagtggacggtgtgttacg
cctttgatgggtcacacctcttgcgtgtggtcacttgctttcagttgtgaaggtacgctt
ctagcatctggatcagctgattgcactgtaaaattgtgggatgtcacaacaagcacaaag
gccccgaaaaatgaagacaagagtggaaatcccaacagactgagatcgttgaaaaccttg
gcaaccaagtctagtccagtgtatagtttgcggttttcgaggaggaatctgctgtttgcg
gctggggtgctctctaagaacgtctaa
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