Gossypium hirsutum (upland cotton): 107953905
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Entry
107953905 CDS
T04793
Name
(RefSeq) transcription initiation factor IIE subunit alpha isoform X1
KO
K03136
transcription initiation factor TFIIE subunit alpha
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107953905
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107953905
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
107953905
Prokaryotic type
Archaeal type
TFE
107953905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIE_alpha
wHTH-PRTase_assc
Zn_ribbon_SprT
Zn_ribbon_8
Motif
Other DBs
NCBI-GeneID:
107953905
NCBI-ProteinID:
XP_040953381
LinkDB
All DBs
Position
D07:complement(11095135..11098835)
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AA seq
483 aa
AA seq
DB search
MSIEPFNRLVKLAARAFYDNVTTKAENQPKMGRGDNKGIAVVVLDALTRRQWVREEDLAK
ELKLHSKQLRRTLRLFEEEKLITREYRKETAKGAKLYNAAVAATVDGQPSGKEGEEKVKL
HTHSYCCLDYAQIYDVVRYRLHRMKKKLKDELEDKNTVQEYVCPGCSKRYNALDALRLIS
LEDESFHCERCNGELVAESDKLAAEEVGEGDDNARRRRRENLKDMLQKMELQLKPLMEQL
NRVKDMPIPEFGTLLSWETRVGAAGHALNGAGSNDPYKNSQGYGGTPMPFLGDTKVEVAF
SGLDSKEDVKTESASTSLKVLPPWMIKQGMNLTKEQRGEVKQESKAEDSSSQPDFSDDKK
STIGNDDKKNVQEDDKKNIQDEYLKAYYAALYKKQQELEEAENKKQEPADTSLETDLSDS
TKRQVGMKVKREDNDEEDDDINWEVDPFSISGNTTNNYKVDDLNVEAEASAGDDEDDIDW
EEG
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcatcgagccctttaacaggttggtgaagcttgcagctcgagcattttatgataat
gtgacgacaaaagcagaaaatcaacctaagatgggtcgtggtgataataaagggattgct
gttgtagtacttgatgctcttacaaggagacaatgggttagggaagaagatttggcaaag
gagttgaaactacattcaaagcaacttcggcggactctacggctctttgaggaagaaaaa
ttaatcacccgtgaatataggaaagagacggctaaaggggcaaaactatataatgctgca
gttgctgcgacggtcgatggtcaaccaagtgggaaagagggagaggagaaggttaaatta
catactcactcttactgttgtctggattatgcacagatatatgatgttgttaggtataga
ttgcaccgtatgaagaaaaaactaaaggatgaactcgaggacaaaaataccgttcaggag
tatgtatgcccgggctgttcaaaacgatacaatgctttagatgcattgcgattgatttcc
ttggaggatgaatcttttcactgcgaaagatgtaacggagaattagtggctgagagtgac
aagttagcagcagaagaagtaggagagggagatgacaatgcgagacgacggcgacgtgaa
aatttgaaggacatgcttcagaaaatggagctacaacttaaaccattaatggaacaactc
aacagagtaaaagatatgcctattccagaatttggaaccctcctatcatgggaaactcga
gtaggtgctgctggtcatgctctaaacggtgctggttctaatgatccttataaaaattct
cagggttatggtggaacaccgatgccatttcttggggatacaaaggttgaagttgctttt
tctggtcttgatagcaaggaagatgtcaaaaccgagagtgcaagcacatcattgaaagtt
ttgccaccttggatgataaagcaaggaatgaacctaacaaaggaacaacggggagaggtc
aagcaagagtcgaaggcagaagacagttcatcacaaccggatttttcagacgacaaaaag
tcaaccattggaaatgatgataagaagaatgtacaggaagatgataagaagaatatacag
gatgagtatcttaaagcatattatgctgctttatataagaaacaacaagaactagaagaa
gcggaaaacaaaaaacaagaaccggcagatacgtctttagaaactgatctttcggattct
accaagcgtcaagttggcatgaaagttaaacgtgaagacaatgatgaggaagatgatgat
attaattgggaagtagatcccttttcaatttcaggcaatacgaccaataattacaaagtc
gatgatttgaatgttgaagcggaggcatctgcaggtgatgacgaggatgatatagattgg
gaagaaggctga
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