Gossypium hirsutum (upland cotton): 107954031
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Entry
107954031 CDS
T04793
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1
KO
K14411
RNA-binding protein Musashi
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107954031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107954031
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107954031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
107954031
NCBI-ProteinID:
XP_016744975
UniProt:
A0A1U8P1J8
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Position
D07:complement(11735555..11738779)
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AA seq
477 aa
AA seq
DB search
MFENGKLFIGGISWDTNEGHLKEYFNTFGEVIEAVIMKDRTTGRARGFGFVVFADPIVAE
RVIKEKHSIDGRMVEAKKAVPRDDQNVMSRSTSSIHGSPGPGNTRKIFVGGLASTVTESD
FKKYFDQFGNITDVVVMYDQNTHRPRGFGFITYDSEEAVDKVLLKNFHELNGKMVEVKRA
VPKELSPSPSHSPVSGYNYDLNRVNNFLNGYTQGYSPSNVGGYGLRVDARFSPVTNSQNR
VPPFGSGYAMGMNIEPKLNPSFGNSASFSSNMSYRRGLSPYYVGNTNRFGSPIGYDGSSG
GNTSFFSSVTRTLWGNGGLDYNTNASSSSLYVGSGSGTIGGNAFGNSGINWGSSAISSQG
EGNNVSRNSVEFGYGSGDNSFGLGTTGYGRNSGTNLTPTSAYAASNGGYDGAFADLYSGA
SVYGDATRGSSMSERDGSGSFGYGLDSATSGVLRKSSPGYIGGYSVNRRQANSGIAT
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagaatggaaagctatttattggtgggatatcttgggacaccaatgaagggcat
ctcaaggagtatttcaatacttttggtgaagtaatagaggcagtgatcatgaaggatcgg
accactgggcgtgctcgtggtttcggtttcgttgttttcgctgaccccatcgttgccgag
agagtaatcaaggagaaacacagcattgatggcaggatggttgaagcaaaaaaggcggtt
cctagggatgaccagaacgttatgagtagaagcactagtagcatccatggttcacctggt
ccaggcaacacaagaaagattttcgtaggaggtttagcatctacagttacggagagtgat
ttcaagaagtattttgatcaattcgggaatatcacagatgttgtagtgatgtatgatcaa
aacacacacaggcctaggggtttcgggttcatcacttatgattcagaagaggcggtggac
aaggtgttgctaaaaaatttccatgaactgaatggtaaaatggtcgaggttaagcgagca
gttcccaaagagttatcacctagtcctagtcatagtcccgtttctggatataactatgat
ctgaatagggtcaacaactttcttaatggctacactcagggatatagtccaagcaatgtc
ggaggctatggacttagggtagatgcgagattcagtccagttactaatagccaaaacagg
gttcctccttttggttctggttatgcaatgggcatgaacattgagcctaagttaaacccg
agttttggcaatagtgcaagttttagtagtaatatgagctatagacgaggattgagccca
tactatgttggtaatacaaatagatttggtagtcctatcgggtatgatggaagtagtgga
ggtaatacttcctttttcagctcagtgacccggaccctttggggaaatgggggacttgat
tataacacaaatgcttctagttccagtctgtatgttggatctggaagtggtactattgga
ggaaatgcctttggaaacagtggaattaattggggttcttccgcaatttccagtcaaggt
gaggggaataatgtttctagaaatagtgtggaatttggctatggaagcggcgataacagc
tttgggttggggacaacagggtatggaagaaacagtgggaccaatttgacaccaacatca
gcatatgctgcatcaaatggtggttacgatggagcctttgcagatctttacagcggtgct
tcggtttacggggatgccactaggggatcatcaatgtccgagcgagatggttctggttcc
tttgggtatggactcgatagtgccacttctggtgttctgcgtaaaagttctcctggttat
attggtggttatagtgttaatagaagacaagcaaatagcggaattgctacctag
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