Gossypium hirsutum (upland cotton): 107954061
Help
Entry
107954061 CDS
T04793
Name
(RefSeq) uncharacterized protein LOC107954061 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107954061
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ghi03000
]
107954061
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107954061
04121 Ubiquitin system [BR:
ghi04121
]
107954061
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107954061
Transcription factors [BR:
ghi03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
107954061
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107954061
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107954061
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107954061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Nab2-like_zf-CCCH_
FYVE
zf-UDP
Motif
Other DBs
NCBI-GeneID:
107954061
NCBI-ProteinID:
XP_016745021
UniProt:
A0A1U8P1C7
LinkDB
All DBs
Position
D07:12577487..12584658
Genome browser
AA seq
1046 aa
AA seq
DB search
MSDEGEKTCPLCAEEMDLTDQQLKPCRCGYEICVWCWHHIMDMAEKDDTEGRCPACRSAY
DKERIVGTAAKCERMVAEINMERKMKSHKAKAKSSEGRKQLSSVRVIQRNLVYIVGLPLN
LADEDLLQRRDYFGQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQSVH
GFVLDGRPLKACFGTTKYCHAWLRNVPCSNPDCLYLHEIGSQEDSFTKDEIISAYTSRVQ
QITGATNNMQRRPGNMLPPPADDYCPNSSASAAKLITKSSPNNTIVTVPKSSPPNGSSGR
SIALPAGASWGMRTLNQPQPVSLACTNGPPKQNSDTVSSTLPFSSAVTNTNLACSLHTDV
IKKPSEEIHPMHTKGKPDLLKPLKQSAGLDCRIATLEKPTLPERVTASKSLSNQLSCTAA
ANHDDQGTNIPSTITSTTFGNGGQTLISSGEKAVIISNTDGDTQRLCSDMSTLTLEGNVL
NGHSDEVRPSSSSSEHGCSSSPSNQGLRQSHIDYYREPLNTAAAGSSVTSPNGVCVSKEQ
SVWKTDARIQAEKNTSSEVEEDVLSFDNQRLKDPEVITRSSYVPNSPISLHLSNHSRSHS
LQHNEAFGAVNLNADTLLVDDKAGDNSCLQGANVSSLSNGYLDKYISSSIGSDITIEGPP
LLSNEEKGKQLGRILANSQSNDANDTGESNIISNILSLDFDTWDESLTSPQNLAKLLGDN
DKQANPLKLSSSWKAPNHNQSRFSFARQEDSKYRLADVESPFNIYGQMPQNHPSGQDFTD
NRDSYLSKFGVSNGLYSCNFEESDNFSSSPSVFSNKLSAASRAQIPVPPGFSVPSRAPPP
GFSSIERVNHAFDATSGNHLMDSSSLLRNSYQAPQSGGIGGPGDIEFIDPAILAVGKGRI
QRGLNNSGLDMRSNFLQQLGPYENEARFQLLMQRSLSPHQNLRYDVGDSFSSLNDSYGIP
SRLMDQSQVNNMSAFAQLNLQQSRNTHNMSNGHWDGWNEVQGGNGLGVAELLRNERLGFN
KFYSGYEDSKYRMAASGDLYNRTFGL
NT seq
3141 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacgagggagaaaagacctgccccctttgcgcggaagagatggatttgaccgat
cagcaactcaagccctgcagatgtggctatgagatatgtgtttggtgttggcatcacata
atggatatggctgagaaggatgatacagaggggaggtgtccagcatgtcgtagtgcttat
gataaagaaaggatagtagggacggctgctaaatgtgagagaatggttgctgaaattaat
atggaaagaaaaatgaagtcacacaaggcaaaggctaagtcatctgaaggaaggaagcaa
ctgagtagtgtgcgagttattcaaaggaatcttgtttacatagttgggttgccacttaat
ctggcagatgaagatcttctccaacgtagagattattttggacaatatgggaaagttcta
aaagtatctatgtctcggactgcagccggtgtcattcagcaatttccaaacaatacatgt
agtgtatatattacgtactcaaaagaggaggaagcggttcggtgtatccagtctgtacat
gggtttgtcttggatggtagaccattaaaggcatgctttggtacaacaaagtattgtcat
gcatggctgagaaatgtgccttgcagcaatcctgattgtctatatttgcatgagattggt
tctcaagaggatagtttcacaaaagatgaaataatatcagcatacacaagtagggttcaa
caaataactggtgcaacaaacaatatgcaacggcgtcctggaaatatgctacctccgccg
gcagatgattattgccccaacagttctgcatctgcagcaaaactgattactaaaagttct
ccaaataatacaatagtgactgttcctaaaagttctcccccaaatggaagctctggtaga
tctattgctcttcccgctggggcttcatggggaatgcgaactttaaaccaaccacaaccg
gtcagtttagcatgtacaaatggacctcctaagcagaattctgacacagtcagcagcaca
ttaccattttcatctgctgtaacaaacaccaatctagcttgttcgttacatactgatgtt
ataaagaagccatctgaggagattcatcctatgcatacaaagggtaaacctgatttgtta
aaacctttgaaacagagtgctggtttagattgtcgaattgccacactagagaaacctact
ttacctgaacgagtaactgcttccaaatcattgagcaaccagttatcttgtacagcagca
gccaatcatgatgaccagggcactaatataccatcaactattacaagcaccacttttggt
aatggtgggcagactcttatttcctctggtgagaaagcggtgataatttccaatactgac
ggggacacacagaggttgtgctctgatatgtcgacattgaccttggaagggaacgtcttg
aatggacattctgatgaagttagaccgagcagttcctcttctgaacatggatgtagcagt
tcacccagtaatcaggggttacgacaatctcatattgattactatcgagaaccattaaat
acagcagctgctgggagttctgtgacatctcccaatggggtgtgcgtctcaaaagagcag
tctgtttggaagactgatgcacgtattcaagctgagaaaaatacaagttctgaagtagag
gaagacgtattgtcttttgataatcaaagactcaaggatccagaagtcattactcgttca
agttatgtgccaaattcaccaatttcgctccatttatcaaatcattctaggtcccattct
ttgcaacataatgaagcttttggtgccgttaatttgaatgctgatactctcttggtagat
gataaagcaggtgacaattcatgtcttcagggagctaatgtttcttctttgtctaatgga
taccttgacaagtacataagcagtagtattggttctgatattacaatagaaggtccccct
ttgctttcaaatgaagagaaagggaagcagctaggaagaatccttgccaattctcagagc
aacgatgctaatgatactggagagagcaacataatttcaaacatattgtcactagatttt
gatacatgggatgagtccttgacttctcctcagaacttggcaaaattgttgggagacaat
gacaagcaggccaatcctctcaaactatctagttcgtggaaagcaccaaatcacaatcaa
tccagattctcatttgccagacaggaggattctaaatatcgtctcgctgatgttgagtcc
ccttttaatatttatgggcaaatgccacagaaccatccttctggccaagattttacagac
aacagggattcctatctaagcaaatttggagtttctaatggtttatattcctgtaacttt
gaggaatctgacaatttttctagtagtccttcagttttttccaataagctttctgcagct
tcaagagctcaaattccagtccctcctggattctctgttcctagcagggcgccacctcca
ggcttttcttcaattgagagagtaaaccatgcttttgacgccacatcaggtaatcatttg
atggactcttcatccctattaagaaattcttatcaggctcctcaaagtggcggtattggt
ggccctggggatatagagtttatagatcccgcaattttggcagttggtaagggtagaatt
cagagaggtctcaacaattcaggcttagacatgagatcaaattttcttcaacagttaggt
ccatatgaaaacgaggccagattccaactattgatgcagagatcgctttctcctcatcag
aacttaagatatgatgttggggatagcttttcatctctgaatgactcttatggaattcct
tctaggctaatggatcaatcacaagttaacaatatgtccgcatttgcacagttgaatctc
caacagtcgagaaatacacataacatgtcaaatggacattgggacggatggaacgaggtc
cagggtggtaatggccttggtgtggcagagctcttaagaaatgaaagactgggatttaat
aagttctattccgggtatgaagattcaaagtataggatggctgcatcaggggatctatat
aacagaacatttggattgtga
DBGET
integrated database retrieval system
