Gossypium hirsutum (upland cotton): 107954169
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Entry
107954169 CDS
T04793
Name
(RefSeq) syndetin-like isoform X1
KO
K23288
syndetin
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107954169
Membrane trafficking [BR:
ghi04131
]
Protein recycling
Others
EARP complex
107954169
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
Motif
Other DBs
NCBI-GeneID:
107954169
NCBI-ProteinID:
XP_040953506
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Position
D07:complement(15171910..15193804)
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AA seq
1099 aa
AA seq
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MQQPQPNLFPFGSVFGNPFLLNAGVGDLSDAGFESSRFFFLVPFLLFQGGGMDFSNVGEK
FLSSVRSARSLGLLPSVSSSDRPEVPARAAAAAAIARALAGLPPHQRYSFPSASEELRSI
YGSRPQSQVVEELEEDFYEEEFDPIKHILENIPSEEIDLEHFEKQATLRLAQLDIVAEQL
SHRVMEHHEVMVKGMNLVRELERDLKVANIICMNGRRHLTSSMNEVSRDLVVNTDSKKKQ
ALMDLLLVLAELLHARDMQVSLESLVQENNYCKAFQVLSEYLQVLDSFSELSVIQEMSNG
VEFWLGRALQKLDSLLLGVCQEFKEEGYLTVVDAYALLGDVSGLAEKMQSFFMQEVISET
HSVLKSIVHEDQDAHLQNSRLTYSDLCLQIPESKFRQCLLKTLAVLFKLICSYHEIMSFQ
LENEALECPSTNAKLMEDRTPGSSSLEESTRSTSSADISEGTYYGNVESHQPVSEGRNGD
GATSSSGSPWYHLRKEAIAFVSQTLLRGRKNLWQLTTSRVLVLLSSSAASTSIHQFLKNY
EDLNTFILAGEAFCGVEVVEFRKKLKGVCENYFSAFHQQNISALKMVLEKETWLILPPDM
MQIISFAGLVGDGVPFIAASDGNSSKPRVLHTDKSAKKIDRVAKKSGFSSWVRNGNPFLL
KLSGSAKEANDCSPLSGATSGEYEGNVHNLHVDIVSSCNGDVNHINGSNSISEEENEDLL
ADFIDEDSQLPSRISQPNFPRSRSLHFSNDEFTAQTGSSVCLLRSMDKYARLMQKLEIVN
VEFFKGICQLFEMFFYYLFEAFGQQNMGSSGKADSLTYRLKRALSRITVDCDQWIKSPSG
SLSSTSAHADLTRTAPQSSNFGHAAGVSFGLKERCAGADTLALVSRILHRSRTHLQSLLL
KSNTAIVEDFFEHVMDSVPDLTEHIHRTTARVLLHINGYVDRIANAKWELKDLGMEHNGY
VDLLLGEFKHYKTRLAHGGIHKEVQDLLLDYGLEIIAETLIEGLSRVKRCTDEGRALMSL
DLQVLINGLQHFVSLNVKPKLQIVETFIKAYYLPETEYVHWARAHPEFSKNQIVGLINLV
ASMKGWKRKARLEALEKIE
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagccgcagccgaatctgttccccttcggcagcgtttttggcaatccttttctg
ttgaatgccggcgttggcgatttaagtgacgctggatttgagagctctaggtttttcttc
ttggtcccgtttttattatttcaaggcggtggaatggatttctccaatgtgggggaaaaa
ttcctcagctccgtacgttccgcccgatcgcttggtctcttgccttccgtttcttcttct
gaccgccccgaggttcctgcccgagctgcagcagcagctgctattgctcgtgcccttgca
ggattgcctcctcatcagagatatagttttccctcggcttccgaagaactgaggtcaata
tatggaagcagacctcaaagtcaagtagttgaggagctggaggaagacttctatgaagag
gagtttgatccaataaaacacatcctggagaatattccttctgaagaaattgatctagaa
cattttgagaaacaggccactcttagattagcacaactggacatagtagcagaacagtta
tcccatcgggtcatggagcatcatgaagtaatggtgaagggtatgaatttggtcagggaa
ttggagagagacttgaaggttgcaaatatcatctgcatgaatggaaggaggcatctaacc
tcatcgatgaatgaggtttcaagggaccttgttgtgaatactgattctaagaagaagcaa
gctcttatggacttgcttctagtattggctgaacttcttcatgcacgggatatgcaagta
tctcttgaatcccttgttcaggaaaataattactgcaaggcatttcaagtactatccgag
tatctacaagtacttgatagtttctcagagctctcagttatacaagagatgagcaatggt
gttgagttttggctaggaagagctcttcaaaagctggattcactcttgttaggagtgtgc
caggagtttaaagaagaaggctatttaactgtggttgacgcatatgctttactaggagat
gtctctggtcttgctgaaaagatgcaaagttttttcatgcaagaagttatctcagaaact
cactctgttttgaagagtattgttcatgaggatcaagatgcacatttgcaaaatagtaga
ctcacctacagtgatctatgccttcagatacctgaatctaagtttaggcagtgtttatta
aaaacactagctgtcttgttcaaattgatttgttcttatcatgaaatcatgagcttccag
ctggagaatgaggctttagagtgcccatcaacaaatgccaaattgatggaagacaggaca
ccaggttcatcttccttagaggagtctacaagatccacttcctcagctgatatatctgaa
gggacctattatggaaatgtagaatcccatcaaccagtttctgagggtagaaatggtgat
ggtgcgacatcaagcagtgggtctccatggtatcatctaaggaaagaagccatagctttt
gtgtcacaaaccctgctgaggggacggaagaatctttggcaacttacaactagccgggta
ctagtactgctttcttcttctgctgcttctacaagcatacatcaatttttgaaaaattat
gaagatcttaacacattcatcttggctggggaagccttctgtggagttgaggtagttgaa
ttcaggaagaaattgaagggtgtttgtgaaaactatttttcagcatttcatcagcaaaat
atatctgcacttaaaatggttttagagaaggaaacttggcttatattgccaccggatatg
atgcaaataattagttttgctggtctagtaggagacggggtaccttttattgcagcatct
gatggtaactcctctaagcctagggtgcttcacactgacaaatcagcaaaaaaaattgac
agagttgccaagaagagtggattttcttcttgggttagaaatggaaatccatttttgcta
aaactaagtggtagtgccaaagaagctaatgattgctccccgcttagtggagcaacctct
ggtgaatacgagggaaatgttcataatcttcatgttgatattgtctcttcctgcaatggt
gatgtaaaccatatcaatggctccaattctatatcagaagaggaaaatgaggatttactt
gctgacttcattgatgaagatagccaactccctagtcgaatatcacaacccaactttcca
agaagtcgctcgttgcatttcagtaatgatgagtttacagcacaaactggatcatctgtt
tgtcttctaaggtcaatggataaatatgcaaggttgatgcagaaacttgaaatagtaaat
gttgagtttttcaagggcatatgccagttatttgagatgtttttctattatttatttgaa
gcctttggtcagcaaaacatgggttcaagtggaaaggccgattctcttacttatcggtta
aagagagccttatcaagaataacagtggattgtgatcagtggatcaaaagtccatcagga
tccttatcatctacatctgcacatgcagatctgacacgtactgctcctcaaagttcaaat
tttggtcatgcagcaggcgtgtcatttggtctaaaggaaagatgtgctggtgctgatact
ttagcccttgtttctcgtatattgcatagatctagaactcatctccaatcattgctgctt
aagagtaatacagctatagttgaagatttctttgaacacgtgatggattcagttccagat
cttacagaacacatacataggacaaccgcaagagtgctgctccacattaacgggtatgtt
gatcgaattgctaatgcaaaatgggaactgaaagaccttgggatggagcacaatgggtat
gtggatttgttgttaggagaatttaagcactataaaacaaggcttgctcatgggggaatt
cacaaggaggttcaagaccttctcttggactatgggcttgaaattattgcagaaactctt
attgaaggtctatcacgagtgaaaagatgtactgatgaaggacgagctctcatgtcatta
gaccttcaggttttaatcaatggcttgcaacactttgtctccttgaatgtgaagccaaag
ttacagatcgttgaaactttcatcaaggcttattatctccctgaaactgaatatgtacac
tgggcacgagctcatcctgaattcagcaagaatcaaattgtgggattgataaaccttgtt
gcttcaatgaaaggttggaaaagaaaagccaggttggaagcgctagaaaagattgaataa
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integrated database retrieval system
