Gossypium hirsutum (upland cotton): 107954262
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Entry
107954262 CDS
T04793
Name
(RefSeq) ATP-dependent RNA helicase DEAH13
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ghi03009
]
107954262
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107954262
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
90S particles
Helicases
107954262
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
DHX37_C
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
ATPase
Sigma54_activat
AAA_19
ResIII
Motif
Other DBs
NCBI-GeneID:
107954262
NCBI-ProteinID:
XP_016745258
UniProt:
A0A1U8P4K2
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All DBs
Position
D07:complement(20266281..20274471)
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AA seq
1320 aa
AA seq
DB search
MENSCPHVELKNGQDALSLEASDSNALILPTKRSKKRRGKDQELQRVKGKQNPKLSKSQI
RKLKKIEEEKEKELFLAKSIEALEKYKIPEDVYSLLQSSKTIGQAETTREKRRTAIQFSK
VGLEVPRSAKSSKVRDGDLSSSSEPEIELEELNSRKDISQNQIEQSIKVEKEVAKHAGDS
LASSQKLAFCKDLSASCSYVDTLPTMEAFCKNNDAPLEEGMETSIPKLPVDDGRKSTMSM
GPLSASTVVVHVSRPDEIENKRKDLPIVMMEQEIMEAINENSTVIICGETGCGKTTQVPQ
FLYEAGFGSNQSTIRSGVIGVTQPRRVAVLATAKRVAFELGLHLGKEVGFQVRHDKKIGD
RCSIKFMTDGILLREVQNDVLLKRYSVIVLDEAHERSLNTDILIGMLSRVIRLRQDLYEK
QQQMVLSGQSISPENMIYPLNLVLMSATLRVEDFISGRRLFCVPPPVIEVPTRQYPVTIH
FSKRTELVDYIGQAFKKVMSIHKRLPPGGILVFVTGQREVEYLCRRLRKASKGVITNISK
GDKSTEAAPNSQINSVEDINMKDISDAFETNEDSAHQKTDRFSSYDEDQYDYHEDDSDAS
YDSETDSELETFDEDGNTLDKKSMENSGNLVDVLGGDGNLASLKAAFEALSGKNMLDSNP
EGQEAVSINPENSLEQPSAPIEKVSEGNRGLNTGALRVLPLYAMLPAAAQLCVFEEVKDG
ERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYNPTNGMETYEIQWISKASAAQRAGRA
GRTGPGHCYRLCSSAVFSNILPDFSCAEISKIPVDGVVLLMKSMGIDKVANFPFPTSPGP
TALVEAERCLKALEALDGSGRLTSVGKAMAHYPMSPRHSRMLLTVIQIMRRVKSYARANL
VLGYAVAAAAVLSSTNPFVIQYEESHNQTDEPKWDDGSNPLDSEKVLNKKEKSQKRKLKE
LAKMSRAKFSNPSSDTLTVAYALQCFELSESQVDFCNENALHLKTMEEMSKLRKQLLQLV
FNQNVHCDVGQDFLWTHGTMEDVEQSWRVASSKYPLLLNEEELLGQAICAGWADRVAKRI
RGVSRSSEGDRKVNTVRYQACLVTETVFLHRASSLSSSAPEFLVYSELLQTKRPYMHGAT
SVKSDWLVKYAKSYCTFSAPLTDPKPYYDPQTDEVYCWVVPTFGPHLWQLPMHNLQISSN
AHRVTVFAYALLEGQVLPCLKSVKQFMSASPDIILKPESYGLSRVGNLLHKFKTWRIDSC
GQLRKIWEDNSRALHSVILDWFQESFHKHFEKLWSEMLSEVFLEPQERFPKRLKRDKRKK
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
atggaaaattcttgcccacatgtagagttgaagaacggacaagatgcattgagtttggaa
gctagtgacagcaatgctttaatcttgcctacaaaaagaagcaagaaaaggagagggaag
gatcaggaacttcaaagggttaaagggaaacaaaaccctaaactgagtaaatctcagata
agaaagttgaagaagatagaggaagagaaagagaaagaactttttctagcaaagagcatt
gaggcattggagaaatacaagattccagaagatgtatattccttgcttcagtcctcaaaa
actatcggtcaggctgaaacaacacgggaaaaacggaggacagctattcaattttctaaa
gtaggtttagaagttccacgtagtgccaaatcttctaaagtgagagatggtgatctttcg
tcttcatcagaacctgaaattgagttggaggaattaaactcgaggaaggatattagccaa
aatcagattgagcaatccatcaaagtggaaaaagaagttgcaaaacatgcgggtgactct
ttggcatcttctcaaaagctggctttttgtaaggacctatctgcaagctgcagttatgtt
gataccttaccaactatggaggctttctgcaagaacaatgatgcacctttagaagaaggc
atggaaacctctattcctaagttgccggtagatgatgggagaaaaagcaccatgtctatg
ggacctctttctgcctcaactgttgtagtgcatgtttcaaggccagatgagattgagaac
aaaaggaaggatcttccaatagtcatgatggagcaggaaataatggaggctataaatgag
aattctactgtaattatttgtggagagactggttgtggtaaaaccacacaagttccacag
tttctttatgaagccggatttggttcaaaccagtctactattagaagtggtgtcattggt
gttactcaaccccgccgtgttgctgtccttgctactgctaagcgagttgcctttgagctt
ggccttcatctaggtaaagaagttgggtttcaagttaggcatgacaagaagattggagac
agatgctctatcaagtttatgactgatgggattttacttagagaagttcagaatgatgtt
ctattaaagcgctactctgtcattgttctggatgaggctcatgagcggagcttgaacaca
gacatacttattggaatgctttctcgggtaattcgacttcggcaggatttgtatgagaag
caacaacagatggttctttcaggacaaagtataagccctgaaaacatgatatatccatta
aaccttgttttgatgagtgctacattgcgagtggaggacttcatttctgggagaaggtta
ttttgtgttcctcctcctgtaatcgaggttcctactaggcaatatcccgtcacgatacat
ttctcaaagagaacagagcttgtggattatattggtcaagccttcaaaaaggtcatgtct
atacataagaggcttccaccaggtggcatacttgtttttgtcactggacagagagaagta
gagtacttgtgccggaggttacgcaaggcttccaagggtgtgatcactaacatttctaaa
ggggacaaaagtactgaggctgctcctaactctcaaataaattcagttgaggacattaat
atgaaggatattagtgatgcatttgagactaatgaagactcagcccaccagaagactgac
aggttcagctcatatgatgaagatcagtatgattatcatgaggatgattcagatgcttct
tatgattcagagacggatagcgaactggaaacttttgatgaggatggcaacacattggat
aaaaaatccatggaaaatagtggtaacttggttgatgtgttgggaggggatggaaacctt
gcttcactgaaggctgcttttgaagctttgtctgggaaaaatatgttagattctaatcct
gagggacaagaggctgtctccatcaatccagagaacagcttagagcaaccctctgctccc
attgaaaaagttagtgaaggtaatagaggcctcaatactggtgccctacgagttctacca
ctttatgccatgctacctgcagctgcacaactttgtgtatttgaggaggtgaaggatgga
gagcggctcgttgttgttgccaccaatgtggctgaaacctctttaaccatccctggaata
aagtatgtagttgacactgggagagaaaaggttaagaactacaatcctaccaatggtatg
gaaacctatgagatccaatggataagtaaagcatctgctgctcaacgagcaggaagagct
ggaagaaccggtcctggccattgttatcgtctctgttcttcagcagtttttagtaacata
ctgcctgatttctcttgcgctgagatatctaaaatacctgttgatggtgttgttcttctt
atgaaatccatgggcatcgataaggttgcaaatttcccattcccgacttctccaggaccc
actgcgttggttgaagcagagcgttgtctgaaagctcttgaagcactcgatggcagtgga
aggttgacatctgtggggaaggccatggctcattatccaatgagtcctcgccactcaagg
atgctccttactgttatccagattatgagaagggtgaaaagctatgcccgggctaatctg
gttcttggatatgcagttgcagctgctgcagttttgagctcgacaaatccttttgtcata
caatatgaagaaagccataatcaaactgatgaaccaaagtgggatgatggatctaatccc
ttagatagtgagaaagttttgaacaagaaagaaaaatcacagaaaagaaagctaaaagaa
ttggccaaaatgtcacgagctaaattctctaatcctagtagtgatactctgacagttgct
tatgcattacagtgttttgagctttcagaaagccaagtggacttctgcaatgagaacgca
ttacatctgaaaaccatggaggaaatgtcaaagctaagaaagcagcttcttcagttggtt
tttaatcaaaatgttcattgtgatgttggacaagatttcttatggactcatggaaccatg
gaagatgtagagcagtcttggagggttgcctccagtaagtacccacttttactgaacgag
gaagagctcttaggacaagctatctgtgctggctgggctgatagggttgccaaacgcatc
agaggagtttcaagatcgtctgaaggcgataggaaggtaaatacagttaggtatcaggcc
tgcttggttacagaaaccgtctttctccatcgcgcttcatctctttcaagttctgctccg
gagttcttggtatacagtgaactattacagacaaagcggccatacatgcatggggcaaca
agtgtgaaatcggattggcttgttaaatatgccaagtcttattgcactttctctgctcct
cttactgatcctaaaccttattacgaccctcaaacagatgaagtatattgttgggtggtt
cccacgttcgggcctcacctatggcaacttccaatgcataatttgcagatcagtagcaat
gcacatcgagtgacagtatttgcatatgctttgcttgaaggtcaagtattgccatgctta
aagtctgtcaagcaattcatgtcagcttctcctgatattattttaaagccagaatcatat
ggtctaagtcgagtcggaaatcttttacataagttcaagacctggaggattgacagttgt
ggtcagttaagaaagatatgggaggacaattcaagagcattacattcagtaattctagac
tggtttcaagaaagtttccacaaacattttgaaaagctttggtcagagatgctttctgaa
gtcttcctagagccccaagaacgttttcccaagagattgaagagagataaaaggaaaaag
tag
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