Gossypium hirsutum (upland cotton): 107954361
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Entry
107954361 CDS
T04793
Name
(RefSeq) DNA mismatch repair protein MSH6 isoform X1
KO
K08737
DNA mismatch repair protein MSH6
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
107954361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107954361
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
107954361
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
PTM_DIR17_Tudor
YL1
NPBW
Motif
Other DBs
NCBI-GeneID:
107954361
NCBI-ProteinID:
XP_016745385
UniProt:
A0A1U8P2P9
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Position
D07:complement(20678290..20686943)
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AA seq
1314 aa
AA seq
DB search
MAPSRRQSNGRSPLVNQQSQITSFFSKKNSSSPSPSPPPLAKHTSKLNPIPGPKPNPSRS
PIPTTPSPGEPKLKKPLLVIGQSPAPTPSSPLNITFGDEVVDKRLRVYWPLDKAWYEGVV
KSFEKVSGKHLIQYDDSEEEELDLGKEKIEWVEETTGRFKRLRRGGSLGFKKVVIDDEDD
DVADSANEKSDDDDSSDEDWGKNAEKEVSEDADEEDMDLEDEKEEEEELGEEEVGMKTSK
RKGGGKTESKKRKANGVAKPESGKKSKTSANVSTKEEFKVPSVEPVKKIETDKASTADKA
LVVDELERFGKREAEKLHFLGLEVRRDANRKRPGDANYNPKTLYLPPGFLKSLSGCQRQW
WEFKSKHMDKVLFFKMGKFYELFEMDAHIGAKELNLQYMKGEQPHCGFPEKNFSMNVEKL
ARKGYRVLVVEQTETPEQLELRRKEKGAKDKVVKREICAVVTRGTLTDGEMLSSNPDPSY
LMAVTESCQSSTNPNEKRVFGMCAVDVATSRIIIGQFEDDSECSALCCLLAELRPVEIIK
PTNLLSLETERAMLRHTRTPLVNELVPTAEFWDADKTVHEVKTIYKCINDQSAAGSVDVG
TGAANTYEDDELGCLPAILSSLLRAGVNGSLALSALGGTLYYLKQAFLDVTLLRFAKFEL
LPSSGFSSIAQTPYMLLDAAALENLEIFENSGNGDSSGTLYAQLNHCVTAFGKRLLRTWL
ARPLYHTDLIKERQDAVAGLKGESLSYALEFRKALSRLPDMERLLARIFASSEANGRNAH
TVVLYEDAAKKQLQQFISALRGCELMVQACSSLSVILKNVESTQLHHLLTTGKGLPNINS
ILKHFKDAFDWVDANNSGRIIPHKGVDLEYDSACERVKEIESSLTKHLKEQQKLLGDSSI
TYVTIGKDSYLLEVPESLRGSVPRDYELCSSKKGFFRYWTPSIKKFLGELSLAESEKETA
FKNILLRLIGRFCKDHNKWRQLVSTTAELDVLISLAIASDFYEGPTCRPRVLGSSCSNEV
PCFSAKGLGHPILRSDSLGKGAFVPNDISIAGSGHASFILLTGPNMGGKSTLLRQVCLAV
ILAQVGADVPAEQFELSPVDRIFVRMGSKDHIMAGQSTFLTELSETALMLSSATQHSLVA
LDELGRGTSTSDGQAIAESVLEHFVHKVQCRGMFSTHYHRLAVDYRNNSKVSLCHMACQV
GKGVAGAEEVTFLYRLTPGACPKSYGVNVARIAGLPDSVLRTAASKSREFEAVYGKHRSK
GSEDKLPMQSSLDEMVVFIQELISLTRLKTCEEGTCIRSLTQLQQRARMLLHQH
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atggcaccgtcgcgtcgtcaaagcaatggcagatcacccctcgttaatcaacagagccag
attacttccttcttctccaagaaaaactcttcttccccatctccatcgcctcctcctctt
gccaaacatacctctaaactcaaccctatccctggccctaaacctaatccaagtagaagt
cccatacctactactccctcccctggggaacccaagctcaaaaagcctctccttgtcatt
ggccaatcgcctgcccccactccctcttctcccctcaacataacgtttggcgatgaagtg
gttgacaagaggctaagggtttactggcccttggataaggcgtggtatgagggcgttgtc
aagtctttcgagaaggtctcgggcaagcatttgattcagtatgatgattctgaggaagag
gagttggatttggggaaggagaagattgagtgggttgaagaaaccacgggaaggtttaag
cggttgcggcgagggggttctttgggttttaagaaagtggtgattgacgatgaggatgat
gacgtggcggatagtgcgaacgaaaagagcgacgatgatgattccagtgatgaagattgg
gggaagaacgccgagaaggaagtgagcgaggatgctgatgaggaagatatggatttggag
gatgagaaagaggaggaagaagaattgggggaagaggaggtgggaatgaaaacatcgaaa
agaaagggcggtggaaagactgaatcaaagaaacggaaggcgaatggcgttgcaaaaccg
gagtccggtaaaaagagtaagaccagtgcgaatgttagtactaaggaagagtttaaggtg
ccttcggtggaaccggtgaagaagattgaaactgataaggcatctactgctgacaaggct
ttggtggttgatgagttagagaggtttgggaagcgtgaagcggagaagttgcacttcctt
ggacttgaggtgcgtagagatgcaaataggaagcgtcctggagatgcaaactacaatcca
aagactttatacttgcctcctggtttcttaaagagcctatcaggttgccagaggcaatgg
tgggagtttaagtcaaaacatatggacaaagttctattttttaagatgggtaaattttat
gaactttttgaaatggatgcacatattggggcaaaagaactgaatttgcaatacatgaag
ggggaacaacctcactgtggatttcctgagaagaatttctctatgaatgtggagaaatta
gctcgaaagggttatcgagttcttgtagtagagcaaacggaaactcctgaacaactggag
cttcgtcggaaagagaaaggtgccaaggataaggttgtcaagcgtgaaatatgtgctgtg
gttaccagaggaaccctaactgatggagaaatgctgtcatcaaatcctgacccttcttac
ctcatggcagtgactgaaagctgtcaaagttcaacaaacccgaatgagaagcgggttttt
ggcatgtgtgctgttgatgttgcaactagcaggattattattggacagtttgaggatgat
tctgagtgcagtgcattgtgttgtctattggctgagctaaggccagtagaaattataaaa
cccactaacttgctcagtcttgaaactgagagggcaatgctgagacatacaaggactccc
ttggtaaatgaattggtccctactgcagagttttgggatgcagacaaaactgttcatgaa
gtcaaaactatctacaagtgtattaatgatcaatcagctgctggatctgttgatgtgggt
acaggtgctgctaatacttacgaggatgatgagttgggctgccttccagctatcctttcc
agtctactcagagctggtgttaatggaagcctagcactctcagctcttggaggcactctt
tattacctaaaacaggcttttctagatgtgacattacttagatttgcaaagtttgagttg
cttccatcctctggcttcagtagcattgcgcaaacaccttatatgcttcttgatgctgct
gcccttgagaatcttgagatctttgaaaacagcggaaatggagactcttctgggacgctc
tatgcacaattaaatcactgtgtaacagcattcgggaaaaggttgctaagaacatggctt
gctagaccattatatcatactgatttgattaaggaacggcaagatgctgtagcaggccta
aagggtgaaagtctatcatatgcacttgaatttcgaaaggcattgtccaggcttcctgac
atggagaggctacttgcacggatctttgctagcagtgaggctaatggaagaaatgcacat
acagttgttttatatgaagatgcggcaaagaagcaacttcagcaattcatatcagcacta
cgaggttgtgaattaatggttcaagcatgttcttcccttagtgttattctgaaaaatgtg
gaatctacgcagcttcatcatttgttaacaactggtaaaggtcttccaaatatcaattcc
attcttaagcatttcaaagatgcctttgattgggttgatgccaacaattctggacgtata
atacctcacaagggagttgatctggaatatgactcagcatgtgaaagagttaaggagatt
gaatctagtttgacaaaacacctcaaggagcagcagaagttacttggagattcatcaatc
acctacgtcacgattggaaaagattcgtatctattggaagtgccagaaagcttgcgcggg
agtgtccctcgagattatgagttatgttcatccaagaagggcttcttccggtattggact
ccatctatcaagaagttcctgggagaactctcgctagctgaatctgaaaaggagacggct
tttaagaacattcttctgaggttaattggacgattctgcaaggatcacaataaatggagg
caactagtttcaacaacagcagaactggatgtactgatcagtctagcaatagcaagtgat
ttttatgaaggtcctacatgtcgtcctcgtgtcttgggctcttcatgctcaaatgaagtg
ccgtgcttttctgcaaaaggtttaggacatcctattctcagaagtgattctttaggcaag
ggtgcatttgtccccaatgacatcagtattgctggttctggccatgcaagttttattctt
cttactggtcctaatatgggtggaaaatcaactcttcttcgccaagtttgcttggctgtg
atattggcccaggtaggggctgatgtccctgcagaacaatttgaactatctcctgttgac
cgaatctttgttcggatgggttccaaagatcatattatggctggacagagtacattttta
acagagctttcagaaactgcattaatgctgtcctctgcgactcaacattcacttgtggca
ttagatgaacttggacgtggaacatcaacttctgatggacaagccattgcggaatcggtt
cttgaacattttgtacacaaggtgcagtgccgagggatgttttcaacacactaccaccgt
ttagctgtggactataggaacaattccaaggtctctctctgtcacatggcgtgccaagta
ggaaagggagttgcaggagctgaagaagttacatttctttacaggttgactcctggtgcc
tgtccaaaaagttacggtgtgaatgttgcacgaatagctgggcttcctgactcagtatta
cgaacagctgccagtaagtctagagaatttgaggctgtatacgggaaacaccgaagcaag
ggatctgaagacaagttgccaatgcaaagtagtcttgacgaaatggtagtttttattcag
gaactgatcagccttacacgcttaaagacatgcgaggagggcacttgtattaggtcattg
actcaacttcaacagagggcaaggatgcttctgcatcaacattga
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