KEGG   Gossypium hirsutum (upland cotton): 107954363
Entry
107954363         CDS       T04793                                 
Name
(RefSeq) PH-interacting protein-like isoform X1
  KO
K11797  PH-interacting protein
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ghi04121]
    107954363
Ubiquitin system [BR:ghi04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     107954363
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR75_1st EIF3I Beta-prop_TEP1_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_SCAP WD40_MABP1-WDR62_2nd WDR55 Beta-prop_TEP1_C Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_WDR90_POC16_2nd Bromodomain Beta-prop_DCAF4 Beta-prop_WDR35_TULP_N WD40_MABP1-WDR62_1st Beta-prop_HPS5 VPS8_N
Other DBs
NCBI-GeneID: 107954363
NCBI-ProteinID: XP_040952584
LinkDB
Position
D07:complement(20704687..20718316)
AA seq 1690 aa
MDWKCSSSAAASSLCKAPLNVSTAMPEKALVETNVDIDLREIYFLIMQFLSAGPCQRTFA
QFSKELLEHQLLPRRYHAWFSRSGEHSGNDDDDGISFPLSYNNLVERYPHIEQDHLVKLL
KQLICTLCSKSVGDAHPPNAADVPTLLGSGSFSLLNSDKSMRNRQGKPMPAYLRWPHMQA
DQVRGLSIREIGGGFRKHHRAPSIRSACYAIAKPSTMVQKMQNIKKLRGHRNAVYCAIFD
RSGRYVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVNSNNVLVASASNDFVIRVW
RLPDGLPVSVLRGHTAAVTAIAFNPRPAFAFQLLSSSDDGTCRIWEARYSHCSPRIYLPK
PSEAATGSGNFPFNNGPSSSNVPQTHQILCCAFNVNGTVFVTGSSDTFARVWSACKPSTD
DTQQPVHELDVLAGHENDVNYVQFSGCAVSSRSSMSDIIKEDNLPKFKNSWFCQDNIVTC
SRDGSAIIWIPRSRRFHGKAGRWTKAYHLKVPPPPLPPQPPRGGPRQRVLPTPRGVNMIV
WSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHIASSYVLDVHPFNPRIAMSAGYDGKT
IVWDIWEGIPIRIYEIGRFKLVDGKFSPDGTSIVLADEVGQIHLLNTGQGESQKDAKYDQ
FFLGDYRPLIWDSAGNALDQETQSTPHRRNMQDLICDASMIPYPEPYQSMYQKRRLGALG
IEWHPSSTKLAIGPDISLGQDFEMPLLEDLERVMEPLPDFMDAMYWEPENEVISDDTDSE
YNVAEECSTEGEQGALCSSSSRGTESSEADSEVECSHKDGLRRSRRRKCSPESELKTSSG
RRVKKRYLDERDGTIPKTSRTKKSKSGRKASKRKSSKGKTLRPQRTAARNARSMMSRITG
TSTDGDDEVDSEGDSSNSESLSQDSSTSNSETERHLENVKLKSMKKEQESEGIVWSHELL
KSQSDTVNRKRLVLKFSLRDSRKPGASEATRLNTGNQINISDPSSGPSGAFDEKKNDRTK
DPGSTTADVELSEHDRIDLEDTRQSLNTEDHLENFVGEKDNKIRWGEVKIRTSKRSRSGD
LLPSDVPNGNRITAVNREEGELTTPTLQDLDGGMMEEFAPDEVHKSLLSLGDHQLNGSAS
ASYSNISLNQGDMDQSSCDKYGNHDSLQTNQVKQSHESNEITPLKLVKLRIRTKAISGDL
GSPSKQKSLTVVNGPTCNERDVRPRNTLPAEQNQSYSRQEMGEGSDRSSSLQLLHSGLKL
NMYDGENPYKDTTDSEGLNVINDHDSEIMFTEAAADAVHRRQSMKMKATSLEQNAWNHNL
RVRVDHALAGTSENEEKTSLKTYNGIASEQWMSSSKHRDRSRSSRTKQGSGHDNDLKFSS
GRKSNPSVRKLSWLMVSEQEEGYRYIPQLGDEVVYFRQGHQECIEEGFMKGTGPWSSRGH
LSAVEICRVVDLAYSHVPGSGESCCKITLRFTDNSSCAFGEVFILTLPELIGLPDFLVEK
TRYDAAMSREWTRRDKCLVWWKNHDEEGGSWWDGRIITSQPKSMDFPDSPWEKYEVIYKD
GCKYRHSAWELHDPNFTWEHPHIGSEIRDRLLSAFGKLERSVVRDQDFYGFQKLNEAAQK
SEFLNRFPVPLYPDFIRLRLENNYYRTLEGVKHDIKIMLSNAESYFARSAHLSSKMRRLS
DWFTKTLSRL
NT seq 5073 nt   +upstreamnt  +downstreamnt
atggactggaagtgttcatcttctgctgctgcgtcttctctttgcaaggcgcctttaaat
gtctcgactgcaatgccggagaaggctctggttgagactaatgttgatattgatcttcga
gaaatttacttcttgataatgcaattcctgtctgctggtccttgccagagaacttttgca
cagttctcaaaggaacttttggaacaccagcttctaccaagaagatatcatgcttggttt
tcaagaagtggggaacatagtgggaacgatgatgatgatggcatctcattcccattaagt
tataacaacttagttgagaggtatcctcatattgagcaggatcacttggtaaagcttctg
aagcaactaatctgtactctgtgcagtaaatctgtaggagatgcccatcctccaaatgct
gctgatgtccctacgctgttgggatctggttccttttcacttttgaattctgacaagagt
atgaggaataggcaaggtaagcctatgcctgcctatcttcgttggcctcatatgcaagct
gatcaagttcgagggttaagtataagagaaattgggggaggtttccggaagcaccaccga
gctccctctattcggtctgcatgctatgctattgctaaaccatctacgatggtgcaaaag
atgcagaacataaagaagttgagagggcaccggaatgctgtctattgtgccatatttgat
cgctctgggagatatgtcattactggttccgatgatcgccttgtcaaaatttggtctatg
gaaactgcattttgcttggccagctgccgtggacatgagggtgacataactgacctggct
gttaattcaaacaatgttttggttgcatccgcttcaaatgattttgtgattcgagtttgg
cgcttgccagatgggttacctgtttcagttctacgagggcatacggcagctgttactgcc
attgcatttaatcccaggcctgcctttgctttccagcttttatcgtcatctgatgatggg
acttgccgaatctgggaggccagatattcacattgtagcccacgcatatacctgccgaag
ccttctgaagctgccactgggagtggcaattttccatttaataatggaccttcctcaagt
aatgttccacaaacccatcaaatattatgttgtgcatttaacgtcaatgggacagttttt
gtcactggtagctctgacacttttgccagggtgtggagtgcctgtaagcctagtacagat
gatacacaacaaccagttcatgagctggatgttttggctggccatgaaaatgatgttaat
tacgttcaatttagtggatgtgctgtatcttctagatcctcaatgtctgatatcataaag
gaggacaatcttccaaaatttaaaaattcctggttctgtcaggacaacattgttacctgt
tctcgtgatggtagtgcaataatctggattcccagatcacgtagatttcatggaaaagca
ggacgttggacaaaggcatatcatctgaaggttccacctcccccgctacctcctcaacct
cctcgaggtggtccacgtcagagagttctccctactcctcgtggtgtcaatatgattgtg
tggagcctggataatcgttttgttctagcagctataatggattgcagaatatgcgtgtgg
aatgctgttgatggtagtttggtacattctttgactggtcacattgcatcgtcttatgtt
ttggatgttcatcctttcaatcctcgaattgcaatgagtgctggatatgatggaaaaaca
atagtttgggatatatgggagggcatacccatccggatatatgaaattgggcgttttaag
ttggttgatgggaagttttctccggatggaacgtcaattgtacttgcagatgaagttggc
cagatacatttgcttaacactggccagggtgaatctcaaaaggatgccaagtatgatcag
ttctttcttggagactatcgcccccttatttgggattctgctggaaatgctcttgatcag
gagacacagtctactccgcatcgtaggaatatgcaagatcttatttgtgatgccagcatg
attccatacccagaaccttatcagagtatgtaccagaaacggcgacttggtgcgctgggt
attgagtggcatccatcctccacaaagttggctattggtccagatatcagtttaggccag
gattttgaaatgccactcttagaagatctggaaagagtgatggaaccactacctgatttc
atggatgccatgtattgggaacctgaaaacgaagttatcagtgatgacactgattcggag
tacaatgttgctgaggaatgttctacagaaggtgaacagggggcattgtgttccagctct
tctagaggcacagagagcagtgaagcagacagtgaggttgaatgcagtcacaaagatggc
cttcgcagatcacgaagaagaaaatgcagccctgaatctgagttgaagacttcatcaggg
aggcgagtcaaaaagagatatttggatgagcgtgatggaactatacccaaaaccagtaga
actaaaaaatcaaaaagtggcagaaaagcttcaaagaggaagtcttccaagggaaagaca
ttgagacctcagagaactgctgcacgtaatgctcgaagcatgatgtctagaatcactggg
acatctacagatggagatgatgaagtggactcagaaggtgattcatcaaatagtgagtca
ttgtctcaggattcaagtacttcaaacagtgaaactgagagacacttggagaatgtaaaa
ctgaagtctatgaagaaggaacaagagtctgagggcatagtatggtctcatgagctcctc
aaatctcaatcagataccgtgaacaggaagagattggtcttaaagttctcgttacgtgat
tctaggaagccaggtgcttcagaggccaccagattgaacactggcaatcagatcaatata
tcagacccttcatctggaccttcaggagcttttgatgagaagaaaaatgaccgcaccaaa
gaccctggctcaaccactgcagatgtggagctctctgagcatgacaggattgatctggaa
gatacaaggcaatctttaaatactgaggaccatttagagaactttgtgggggaaaaggat
aacaaaatcagatggggagaggttaaaattcggacatccaagcgttcaaggtcaggagat
ttgttgccaagtgatgtccccaacggaaacaggattactgctgtgaatagggaagaggga
gagttaactactcctacattgcaagatctggatggagggatgatggaagagtttgctcct
gatgaggtgcacaaatctttactgtccctaggtgaccatcaactgaatggtagtgcttca
gcatcttactctaatatcagcctcaaccagggagatatggatcagtctagctgtgataaa
tatggtaatcatgactccttgcaaacaaatcaggttaaacaatctcatgaatcaaacgag
attaccccactcaaattagtgaaattaagaataaggacaaaagcaatttcaggggacctt
ggaagtccttccaaacagaagtccctcactgtagttaatggtccaacatgcaacgaacgt
gacgtgaggcccagaaacactttgcctgcagaacaaaatcaaagttacagcaggcaagaa
atgggtgaaggttcggacagatcaagttctctgcagttgttgcactcaggtttgaagttg
aacatgtatgatggggaaaacccatataaggacacaactgattctgaaggcttaaatgtc
atcaacgatcatgattcagaaattatgtttaccgaagcagcagctgatgcagttcacaga
agacagtccatgaagatgaaggcaacttcactggagcagaatgcttggaaccataacttg
agggtaagagtagatcatgcattagcagggacatcagaaaatgaagaaaaaacctctttg
aaaacatataatggtattgcatctgaacaatggatgtcaagttccaaacatagagacaga
tcaagatccagcagaaccaagcagggcagtggccatgacaatgacttaaaattttcaagt
ggaaggaagtcaaatccttctgttagaaaattatcatggttgatggtgtcggaacaggaa
gagggttatcgttatatacctcagctgggcgatgaagttgtatatttcagacaggggcat
caagagtgcattgaagaaggtttcatgaaggggactggtccatggagctcaaggggacac
ctgagtgcggtggaaatttgcagggttgtagaccttgcttattcccacgttccaggttct
ggagagagttgctgtaaaatcacacttagatttactgataattcatcatgtgcatttggc
gaggtatttatattgaccttgcctgagttgataggtcttcctgattttcttgttgagaag
acaagatatgatgctgcaatgagcagagaatggactcgtagggataaatgcctagtatgg
tggaagaaccacgatgaggagggtggaagttggtgggatggtagaatcattacttcacag
cccaaatctatggatttccctgatagtccttgggaaaaatatgaagttatttacaaagat
ggctgtaagtatcggcacagtgcttgggaactgcatgaccctaactttacatgggagcac
ccacatattggttctgaaatcagggataggctcctgtctgcttttggtaaattagagcgt
tcagtagtcagagatcaggatttttatggattccagaaactgaacgaagctgctcagaag
tcagaattccttaacaggtttccagttccattgtatcccgatttcatccggcttaggtta
gagaacaactattatcgaacgttggaaggagtgaagcatgacataaaaataatgctttca
aatgcggagagttatttcgctagaagtgctcacctatcttcaaagatgaggcgtctatca
gactggtttaccaagacattgtcaaggttgtag

DBGET integrated database retrieval system