Gossypium hirsutum (upland cotton): 107954761
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Entry
107954761 CDS
T04793
Name
(RefSeq) pre-mRNA-processing factor 17 isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107954761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107954761
Spliceosome [BR:
ghi03041
]
Complex C
Other components
Step II factors
107954761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_RFWD3
Beta-prop_RIG_2nd
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_EIPR1
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
eIF2A
WD_LRWD1
Beta-prop_NWD2_C
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_SCAP
PAN2_N
Motif
Other DBs
NCBI-GeneID:
107954761
NCBI-ProteinID:
XP_016745910
UniProt:
A0A1U8P494
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All DBs
Position
D07:38699932..38704697
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AA seq
583 aa
AA seq
DB search
MDLLQTYADKSDGEDQSHQPSTSSPDSSPPRLIPSKSAAPKVDDTMLALTVAKAHQSHSQ
PIDPSQHVVAFNPTYDQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDAAIESFVFDEQY
NTFHKYGYAADPSGNNYIGDLDALQKNDAISVYNIPQHEQKKRKIEKMKDVEMEDEVVGG
EHEVDPTEIDNPASDVWLMKNKKSPWAGKKEGVQTELTEEQKKYAEEYAKKKEEKGHSGE
KGEHLVDKTTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLIHTWSGHTKGVSAIRF
FPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGSKFLTAGYDKNI
KYWDTETGQVISTFSTGKIPYVVKLNPDEDKQNILLAGMSDKKIVQWDINTGQTTQEYDQ
HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNTNWL
AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD
WKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggatcttctccaaacttatgcagataaaagtgatggtgaagaccaaagtcaccagcca
tctacttcatctccagactcttcacctccacgactcatcccctccaaatctgctgcaccc
aaggttgatgacacaatgctggccttaacagtagcaaaagcgcatcaatcccattcgcag
cccatagatccaagccagcatgttgttgccttcaatcccacctatgaccaactctgggcc
cctatttatggcccagctcatccatatgccaaggatggcatcgcccagggcatgcgcaac
cacaagctgggatttgttgaggatgccgcaattgaatcttttgtttttgatgagcaatac
aacactttccacaaatatggttatgctgctgacccttcggggaacaactatatcggtgat
ttggatgctttgcagaagaatgatgccatttcagtctataacattccacaacatgagcaa
aagaagcgaaaaattgaaaaaatgaaggatgttgaaatggaggatgaggttgtgggtggt
gagcatgaggttgatccaacagagattgataatccggccagtgacgtatggttgatgaag
aataaaaagagtccttgggcaggtaaaaaagagggggtgcaaacagagttgactgaggag
caaaagaagtatgcagaggagtatgcgaagaagaaagaagagaaagggcattcaggtgag
aaaggtgagcacttggtggataagactacttttcacggaaaggaggagagagactaccaa
ggaaggtcttggattgctcctcctaaagatgcaaaagcaacaaatgatcattgttatata
ccaaaaagattgatacacacttggagtgggcacactaagggtgtctcagctatcaggttc
ttccctaagtacgggcatttgattctctctgctgggatggatactaaagtgaagatctgg
gatgtgttcaattcaggcaagtgtatgaggacatatatgggtcattcaaaggcagtgaga
gatatttcattttgtaatgatggcagtaaatttttaactgctggatatgacaagaacatt
aagtattgggatactgaaaccgggcaggttatatcaactttctcaactgggaagattcct
tatgtagttaagcttaaccctgatgaagataagcagaatattctgttagcgggaatgagt
gataagaagattgttcagtgggatattaatactggacagactacacaagagtatgatcag
catttaggggcagtgaataccattacatttgtcgataacaataggagatttgttacctca
agtgacgacaagtcacttcgagtatgggagtttggaattcctgttgttataaagtatatt
agtgagcctcacatgcactctatgccagccatttcacttcaccccaacactaattggctt
gctgctcaaagtttggataaccaaattcttatttacagcaccagggagcggtttcagctt
aacaaaaagaaaaggtttgctgggcacattgtggctggctatgcttgccaagtcaatttt
tcaccagacggacggtttgttatgtctggagatggagagggtaagtgctggttttgggac
tggaagagctgcaaagtatttagaaccctcaaatgccatgagggagtttgcattgggtgt
gagtggcatccattggagcaaagtaaagttgcaacttgtggctgggatggcttgatcaag
tactgggactaa
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