Gossypium hirsutum (upland cotton): 107954926
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Entry
107954926 CDS
T04793
Name
(RefSeq) probable pectate lyase 20
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107954926
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107954926
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Paralog
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107954926
NCBI-ProteinID:
XP_016746109
UniProt:
A0A1U8P792
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Position
D07:complement(30352929..30356455)
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AA seq
446 aa
AA seq
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MGISNRLLSSLALLVTFILFFVCVKASAEKTELNSRFSEENKLQGLKNSSMEEGLEDEQW
INEHSVDNPEEIASMVDMSIRNSTERRKLGYFSCGTGNPVDDCWRCDRHWYLRRKNLANC
GIGFGRNAIGGRDGRYYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIRLKQE
LIMNSFKTIDGRGANVHIANGACITIQYVTNIIIHGIHIHDCKPTGNAMVRSSPSHYGWR
TMADGDGISIFGASHIWVDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSD
SYVRDKQMQVTVAYNHFGEGLIQRMPRCRNGYFHVVNNDYTHWEMYAIGGSANPTINSQG
NRYLAPFNRFAKEVTKRVERSKSKWRHWNWRSEGDMFLNGAYFTPSGAGAAASYAKASSL
AAKSSSLVGTITSNAGALSCRRGFMC
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggggatttctaacagattgctctcttcgttagctttgctagtaacgtttattttgttt
ttcgtttgtgtcaaggcctcagcagagaaaacagagctgaattcaaggttcagtgaagaa
aacaagttgcagggcttgaaaaactcatcaatggaagaggggttggaggatgagcaatgg
ataaatgagcactcagtcgacaatccagaggaaattgcttcaatggtggatatgagcata
agaaatagcacagagaggaggaaattgggatatttctcatgtggaacagggaatccggtt
gatgattgctggcgatgtgatcggcattggtatctcaggcgaaagaaccttgccaactgt
ggcattggctttggacgcaacgccattggtggtcgtgatgggaggtactatgtggtgact
gaccctagggatgacgaccctgtgaaccccaaaccaggcaccctccgccatgctgttatc
caggaccgcccactttggatcgtgttcaagcgtgacatggtgatcaggttgaagcaggag
cttataatgaacagttttaagaccatcgatggtcgtggtgccaatgtgcatatcgctaat
ggggcctgcatcaccatccagtatgtcactaatattatcatccatggaatccacattcat
gattgtaagcccaccggcaacgccatggttcgaagctccccatctcattacgggtggagg
accatggctgatggggatggcatttccatatttggggcaagccatatttgggttgaccat
aattcactctctaactgtgctgatggactcattgatgctataatgggttccactgcaatt
accatctcaaacaactacttcacccaccataacgaggttatgttgttgggacatagtgat
tcttacgtaagagacaagcagatgcaagtgaccgttgcttataaccatttcggtgagggt
cttatccaaagaatgccaaggtgtagaaatggatattttcatgtagtgaacaacgactac
acccactgggagatgtatgccattggtggaagtgcaaatcccaccattaacagccagggc
aaccgataccttgcccctttcaaccgctttgctaaagaggttacaaagagagtggagaga
tcgaagagtaaatggagacattggaattggaggtcagaaggagacatgtttttaaatgga
gcatatttcactccatcaggagcaggagcagcagccagctacgctaaggcctctagctta
gcagccaaatcctcttccttagttggcaccattacttcaaatgcaggcgccctttcttgt
cgccgtggtttcatgtgttag
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