Gossypium hirsutum (upland cotton): 107955079
Help
Entry
107955079 CDS
T04793
Name
(RefSeq) protein CAF40-like
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107955079
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107955079
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107955079
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
PgaPase_1
Motif
Other DBs
NCBI-GeneID:
107955079
NCBI-ProteinID:
XP_016746280
UniProt:
A0A1U8P583
LinkDB
All DBs
Position
D07:50197802..50207214
Genome browser
AA seq
272 aa
AA seq
DB search
MVREAASPPSFPPIRNPCINLLQIYRLVRQLRSLEIGEQCLDLLSKVITSAYRPLVSNRL
SERVVRRTCNAIGLFQTLASHPDTKMSFIRASMPEYLYAFLKTRSRERNYERLRFASLVV
IGSLVEVDNPEVVDYLLATEMFPCCMEIGTTFSKTVATFIIYRILLNEKGLNYLLSMPER
YLVVTHCLENMVEILDVEDEEYLPHLLKNIIGCYLRISENERIRADLSGYIPWLLVDYKY
VNIIRGDPEAFGNLRRLIGFSEVAQAYKRIYR
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
atggttagagaggcggcgtctccaccctcattcccacccatccgtaacccctgtataaac
ctccttcagatctaccgtttggtgcgacagcttcgatcattggaaatcggagagcagtgt
cttgatcttctttccaaggtaataacttccgcttaccgtccactagtatccaataggctt
tcagaaagagttgtaagacgaacttgcaatgctatagggcttttccagactctagcttct
caccctgatacaaagatgtcatttatcagagcttctatgccagagtatctttatgccttc
ttgaaaaccaggagcagagaaaggaactatgaacgtctacggttcgccagcttagttgtg
attgggtccctagtagaggttgacaatccagaagttgttgattaccttcttgccacagaa
atgtttccttgttgcatggaaattggcacaacattttcaaaaacagtggccacatttata
atttacagaatcttactaaatgagaaagggctcaactacttgctctccatgccggagcga
tatctcgtggtaacccattgtttggaaaacatggttgaaatacttgatgtagaagatgaa
gaatatttgccacacttgctgaaaaacatcattggctgttatctcaggatctcagaaaat
gaaaggatacgagcagacttgtcaggctacattccatggttgttggtagattacaaatat
gttaatatcattcgtggtgatccagaagcctttggtaacctacggagattgattggcttt
tcggaagtagcacaggcatacaagagaatctaccggtga
DBGET
integrated database retrieval system
