Gossypium hirsutum (upland cotton): 107955257
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Entry
107955257 CDS
T04793
Name
(RefSeq) probable pectate lyase 20
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107955257
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107955257
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
107955257
NCBI-ProteinID:
XP_016746487
UniProt:
A0A1U8P5I4
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Position
A07:complement(44994524..44998013)
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AA seq
446 aa
AA seq
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MGISKRLLSSFALLVTFILFFVCVKASAEKTELNSRLSEENKLQGLKNSSMEEGLEDEQW
INEHSVDNPEEIASMVHMSIRNSTKRRKLGYFSCGTGNPVDDCWRCDLHWYLRRKNLANC
GIGFGRNAIGGRDGRYYVVTDPRDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIRLKQE
LIMNSFKTIDGRGANVHIANGACITIQYVTNIIIHGIHIHDCKPTGNAMVRSSPSHYGWR
TMADGDGISIFGASHIWVDHNSLSNCADGLIDAIMGSTAITISNNYFTHHNEVMLLGHSD
SYVRDKQMQVTVAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQG
NRYLAPFNRFAKEVTKRVERSKSKWRHWNWRSEGDMFLNGAYFTPSGAGAAASYAKASSL
AAKSSSLVGTITSNAGALSCRRGFMC
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atggggatttctaagagattgctctcttcgtttgctttgcttgtaacgtttattttgttt
ttcgtttgtgtcaaggcctcagcagagaaaacagagctgaattcaaggctcagtgaagaa
aacaagttgcagggcttgaaaaactcatcaatggaagaggggttggaggatgagcaatgg
ataaatgagcactcagtcgacaatccagaggaaattgcttcaatggtgcatatgagcata
agaaatagcacaaagaggaggaaattgggatatttctcatgtggaacagggaatccggtt
gatgattgctggcgatgtgatctgcattggtatctcaggcgaaagaaccttgccaactgt
ggcattggctttggacgcaacgccattggtggtcgtgatgggaggtactatgtggtgact
gaccctagggatgacgaccctgtgaaccccaaaccaggcaccctccgccatgctgttatc
caggaccgcccactttggatcgtgttcaagcgtgacatggtcatcaggttgaagcaggag
cttataatgaacagttttaagaccatcgatggtcgtggtgccaatgtgcatatcgctaat
ggggcctgcatcaccatccagtatgtcactaatattatcatccatggaatccacattcat
gattgtaagcccaccggcaacgccatggttcgaagctccccatctcattacgggtggagg
accatggctgatggggatggcatttccatctttggggcaagccatatttgggttgaccat
aattcactctctaactgtgctgatggactcattgatgctataatgggttccactgcaatt
accatctcaaacaactacttcacccaccacaacgaggttatgttgttgggacatagtgat
tcttacgtaagagacaagcagatgcaagtgaccgttgcttataaccatttcggtgagggt
cttatccaaagaatgccaaggtgtagacatggatattttcatgtagtgaacaacgactac
acccactgggagatgtatgccattggtggaagtgcaaaccccaccattaacagccagggc
aaccgataccttgcccctttcaaccgctttgctaaagaggttacaaagagagtggagaga
tcgaagagtaaatggagacattggaattggaggtcagaaggagacatgtttttaaatgga
gcatatttcactccatcaggagcaggagcagcagccagctacgctaaggcctctagctta
gcagccaaatcgtcttccttagttggcaccattacttcaaatgcaggcgccctgtcttgt
cgccgtggtttcatgtgttag
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