Gossypium hirsutum (upland cotton): 107955291
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Entry
107955291 CDS
T04793
Name
(RefSeq) pre-mRNA-processing factor 17-like isoform X1
KO
K12816
pre-mRNA-processing factor 17
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107955291
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107955291
Spliceosome [BR:
ghi03041
]
Complex C
Other components
Step II factors
107955291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
WD_LRWD1
eIF2A
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
Beta-prop_Vps41
Beta-prop_SCAP
PAN2_N
Motif
Other DBs
NCBI-GeneID:
107955291
NCBI-ProteinID:
XP_016746516
UniProt:
A0A1U8P5X8
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Position
A07:57884612..57889230
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AA seq
583 aa
AA seq
DB search
MDLLQTYADKSDGEDQSHQPSTSSPDSSPPRLIPSKSAAPKVDDTMLALTVAKAHQSHSK
PIDPSQHVVAFNPTYDQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDAAIDSFVFDEQY
NTFHKYGYAADPSGNNYIGDLDALQKNDAISVYNIPQHEQKKRKIGKMKDVEMENEVVGG
EHEVDPTEIDNPASDVWLMKNKKSPWAGKKVGVQTELTEEQKKYAEEYAKKKEEKGHSVE
KGEHLVDKTTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKKLIHTWSGHTKGVSAIRF
FPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAGYDKNI
KYWDTETGQVISTFSIGKIPYVVKLNPDEDKQHILLAGMSDKKIVQWDINTGQTTQEYDQ
HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPAISLHPNTNWL
AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD
WKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atggatcttctccaaacatatgcagataaaagtgatggtgaagaccaaagtcaccagcca
tctacttcatctccagactcttcacctccacgactcatcccttccaaatctgctgcaccc
aaggttgatgacacaatgctggccttaacagtagcaaaagcgcatcaatcccattcgaag
cccattgatccaagccagcatgttgttgccttcaatcccacctatgaccaactctgggcc
cctatttatggcccagctcatccatatgccaaggatggcatcgcccagggcatgcgcaac
cacaagctgggatttgttgaggatgccgcaattgactcttttgtttttgatgagcaatac
aacaccttccacaaatatggttatgctgctgacccttcgggaaacaactatatcggtgat
ttggatgctttgcagaagaatgatgccatttcagtctataacattccacaacatgagcaa
aagaagcgaaaaattggaaaaatgaaggatgttgaaatggagaatgaggttgtgggtggt
gagcatgaggttgatccaacagagattgacaatccggccagtgacgtatggttgatgaag
aataaaaagagtccttgggcaggtaaaaaagtgggggtgcaaaccgagttgactgaggag
caaaagaagtatgcagaggagtatgcgaagaagaaagaagagaaagggcattcagttgag
aaaggtgagcacttggtggataagactacttttcacggaaaggaggagagagattaccaa
ggaaggtcttggattgctcctcctaaagatgcaaaagcaacaaatgatcattgttatata
ccaaaaaaattgatacacacttggagtgggcacactaagggtgtctcagctatcaggttc
ttccctaagtacggtcatttgattctctctgctgggatggatactaaagtgaagatctgg
gatgtgttcaattcaggcaagtgtatgaggacatatatgggtcattcaaaggcagtgaga
gatatttcattttgtaatgatggcactaaatttttaactgctggatatgacaagaacatc
aagtattgggatactgaaaccgggcaggttatatcaactttctcaattgggaagattcct
tatgtagttaagcttaaccctgatgaagataagcagcatattctgttagcgggaatgagt
gataagaagattgttcagtgggatattaatactggacagactacacaagagtatgatcag
catttaggggcagtgaataccattacatttgtcgataacaataggagatttgttacctca
agtgacgacaagtcacttcgagtatgggagtttggaattcctgttgttataaagtatatt
agtgagcctcacatgcactctatgccagccatttcacttcaccccaacactaattggctt
gctgctcaaagtttggataaccaaattcttatttacagcaccagggagcggtttcagctt
aacaaaaagaaaaggtttgctgggcacattgtggctggctatgcttgccaagtcaatttt
tcaccagacggacggtttgttatgtctggagatggagagggtaagtgctggttttgggac
tggaagagctgcaaagtatttagaaccctcaagtgccatgagggagtttgcattgggtgt
gagtggcatccattggagcaaagtaaagttgcaacttgtggctgggatggcttgatcaag
tactgggactaa
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