Gossypium hirsutum (upland cotton): 107955414
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Entry
107955414 CDS
T04793
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107955414
Spliceosome [BR:
ghi03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
107955414
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_12
UTP6_C
NRDE-2
TPR_16
TPR_MalT
TPR_10
Motif
Other DBs
NCBI-GeneID:
107955414
NCBI-ProteinID:
XP_016746687
UniProt:
A0A1U8P632
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All DBs
Position
A07:94194298..94203393
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AA seq
813 aa
AA seq
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MGDSEAVVTDSSASMDYTSAVYNSTGSGACPPEATGDPNASGAPVDGTYAASGGYLNSAG
QKGQICVTNESKPTGGSTDGNAINAGNTAVDATKTAGYSISLNGYIVNEARNTTMVENGN
VLDNVGIASNAPEFVGSVPAMSGEEDRLWSIVRANSLDFNAWTALIEETEKVAEDNILKI
RKVYDAFLAEFPLCYGYWKKYADHEARIGSMDKVVEVYERAVQGVTYSVDIWVLYCSFAI
ETYGDPETIRRLFERGLAYVGTDYLSFPLWDKYIEYEYMHQEWSRLAVIYTRILENPNHQ
LDRYFNSFKELAGSRPFLELRTAEEAAAYVSGIASEADGEVLEGEVRPGAAEQTPKPVSA
GSTEAVELEKYVAIREALYKKAKEFDSKILGFETAIRRPYFHVRPLNVSELENWHNYLDF
VEREGDVNKVVKLYERCLIACANYPEYWIRYVLCMEASRRMDLADNALARATRFFVKRQP
EIHLFDARFKEQHGDIPGARAAYQLVHSEISPGLLEAIIKHANMESRLGKLDDAFSLYEQ
AIAIEKGKEHSQTLSMLYAQYSRFSFLVSGNAEKAREILTRALDHVQLSKPFLEALIHFE
TILPPLRQIDYLESLVDKFLAPSLDGSTADKEDLSSIFLEFLGLFGDVQSIKRAEDRHAK
LFLPCRPISELRKRQAEDFSSSDKTKLAKSYSGAPSPGQSLLGIYPNAQNQWQAGYGAQP
QTWPPTTQSPAQAQAQPWTPGYGQQGAYGACSSYGSNYATQQVPTSVPQSAGYGAYPATY
PVQSFPQPTTAMTLTPVQQPAATVPQNYYGSYY
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgggagacagtgaagcagtagttactgactcatcagcaagtatggattatacatcagca
gtctataattctactggttctggtgcttgtccccctgaggctactggagatccaaatgct
tctggtgcaccagtagatggaacttatgctgcttctggtggttacctgaattcagctggt
caaaagggtcaaatctgcgtaacgaatgaaagtaagccaactggtggatcaaccgatggg
aatgctatcaatgctggaaacacagcagtagatgcaactaaaactgctggttatagtatt
tcattaaatggctatattgtaaatgaagctcgaaatactacaatggttgagaatgggaat
gttttagataatgttggcatagcttctaatgcaccagagtttgtgggttctgtgccagcc
atgtctggtgaagaggatcgtttgtggagtatcgtgagagctaattctttggattttaat
gcttggactgcattgattgaggagacagagaaggttgcagaggacaatatactgaagatt
cgaaaagtttatgatgctttcttggctgagtttcctttgtgttatggttactggaaaaag
tatgcggatcacgaagcacgcataggctccatggacaaagttgtggaggtttatgaaaga
gcagttcaaggagtgacttattctgtggacatctgggtgctatattgttcttttgctata
gaaacatatggagatccggaaactatccgcaggctttttgaacgaggattagcgtatgtt
ggaactgattatctttcctttcctctttgggataagtacattgaatacgaatacatgcat
caggaatggagtcgccttgctgttatatatacacgaatattagagaaccccaatcatcag
ctagataggtatttcaacagttttaaagagctagcaggaagtagaccttttttggaatta
agaactgccgaggaagctgctgcatatgtatcaggtatagcttcagaggctgatggggaa
gtacttgaaggagaggttcgtcctggtgctgcagaacaaactcctaagcctgtaagtgct
ggctcaacagaagctgttgagttggagaagtatgttgccattagagaagcgctgtataag
aaggctaaagagttcgactctaagattcttggttttgaaacagctatcaggaggccttac
tttcatgtgcgtccccttaatgtttctgagcttgaaaattggcataactacctggacttc
gtagaaagagagggtgacgtcaataaggtggtcaaattatatgaaaggtgcctaatagcc
tgtgccaattatcctgaatactggatacgatatgttttatgtatggaagccagcagaaga
atggatcttgctgataatgcacttgcgcgtgctacgcgattctttgtcaagaggcaacca
gagatccatctttttgatgctcgattcaaggaacagcatggggacatacctggtgctcga
gctgcatatcaacttgttcacagtgaaatttcacctggtcttcttgaggcaattattaag
catgcaaatatggaaagccgtctggggaaacttgatgatgccttctctttatatgagcaa
gccattgctattgaaaaaggaaaggagcattctcaaacgttatcaatgttgtatgcacag
tactctagattttcattcttggtttctggaaatgcagagaaggctagggaaattctgact
agggcacttgatcatgtccaactatctaaaccattccttgaggccttaatacattttgaa
acaattttgccacctctaagacagattgattatttagaatcattggttgacaagtttttg
gccccgagtttggatggcagtactgcagacaaggaagatctatctagcatatttttggag
ttcttgggtctttttggagatgtacagtctattaaaagggctgaagatcggcatgctaag
ctctttctaccctgtaggcccatttctgaattaagaaaacgtcaagctgaagatttttca
tcttcagataagacaaagctggcaaaatcctactcaggtgccccttcacctggccagtct
ttacttggtatatatccaaatgcacaaaaccagtggcaagctggttatggtgcgcaacct
caaacttggccacccactacacagtctccggcacaggcacaggcacaaccgtggacccct
ggctatggccaacagggagcgtatggtgcttgtagtagttatggtagcaattatgctact
caacaagtacccacatcagttccacaaagcgccggttacggtgcttatcccgctacatac
cctgttcagagttttcctcagccaactaccgccatgacactaaccccagttcagcaacct
gctgcaactgttcctcagaattactatggttcttactattga
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