Gossypium hirsutum (upland cotton): 107955643
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Entry
107955643 CDS
T04793
Name
(RefSeq) cell differentiation protein rcd1 isoform X1
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107955643
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107955643
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
107955643
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
PgaPase_1
Motif
Other DBs
NCBI-GeneID:
107955643
NCBI-ProteinID:
XP_016746936
UniProt:
A0A1U8P6V4
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Position
A07:86945484..86949084
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AA seq
341 aa
AA seq
DB search
MVRKAAYPPSFRPIRNPCINLLQIYRLVRQLRSLEIGEQCLDLLSKNRHSCNLLAIFLWS
SPGSMRLLLLVITSAYRPLVSNRLSERVVRRTCNAIGLFQTLASHPHTKMSFIRASMPEY
LYAFLKTRSRERNYERLRFASLVVIGSLVEVDNPEVVDYLLATEMFPCCLCCMEIGTTLS
KTVATFIIYRILLNEKGLNYLLSMPERYLVVTHCLENMVEILDVEDEEYLPHLLKNIICC
YLRISENEKIRADLSGYIPWLLVDYKYVNIIRGDPEALCNLRRLIWLFGSGTGIQENLPV
SHLDWSSDDEECNLLRTEIEKPKMAKKEVRKREIPERRGRV
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atggttagaaaggcggcgtatccaccctcattccgacccatccgtaacccctgtataaac
ctccttcagatctaccgtttggttcgacagcttagatcattggaaatcggagagcagtgt
cttgatcttctttccaagaatagacattcttgtaaccttttggcaattttcttatggagt
tcccctggttctatgaggctacttttactggtaataacttccgcttaccgtccattagta
tccaataggctttcagaaagagttgtaagacgaacttgcaatgctatagggcttttccag
actctagcttctcaccctcatacaaagatgtcatttatcagagcttctatgccagagtat
ctttatgccttcttgaaaaccaggagcagagaaaggaactatgaacgtctaaggttcgcc
agcttagttgtgattgggtccctagtagaggttgacaatccagaagttgttgattacctt
cttgccacagaaatgtttccttgttgcctatgctgcatggaaattggcacaacattgtca
aaaacagtggccacatttataatttacagaatcttactaaatgagaaagggctcaactac
ttgctctctatgccggagcgatatctcgtggtaacccattgtttggaaaacatggttgaa
atacttgatgtagaagatgaagaatatttgccacacttgctgaaaaacatcatttgctgt
tatctcaggatctcagaaaatgaaaagatacgagcagacttgtcaggctacattccatgg
ttgttggtagattacaaatatgttaatatcattcgtggtgatccagaagccttatgtaac
ctacggagattgatttggctttttggaagtggcacaggcatacaagagaatctcccggtg
agccacctggattggtcatcagatgacgaagaatgcaatctgttacgaacagaaatcgag
aagccaaaaatggcaaagaaagaagtaaggaaaagagaaattccagagaggagaggacga
gtttga
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