Gossypium hirsutum (upland cotton): 107956237
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Entry
107956237 CDS
T04793
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein 1-like
KO
K14411
RNA-binding protein Musashi
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107956237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107956237
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107956237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
107956237
NCBI-ProteinID:
XP_040972507
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Position
A07:90708895..90711352
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AA seq
475 aa
AA seq
DB search
MFENGKLFIGGISWDTNEERLKEYFSSFGEVVEAMIMKDWTTGRTRGFGFIVFSDLAVAE
KVIKEKHNIDGRMVEAKKAVPRDDQNIMSRSTSSIQGLPSLCRIRKIFVGGLASKVTESD
FKKYFNQFGNVTDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKSFHELNGKMVEVKRA
VAKELLPGPCRSPLSGYNYGLNSVNNFLSGCTQGYTPSNIRSFGLRMDGRFTTVPGGRSG
FPPFGSGYGMGMNFEPGLNPSFGNSANFSSNMNHGRGLNPYYIGNVNRFGSPIGYDGSTE
GNTSFFSSVTQNLWGNGGLNYNTNASSSNAYIGSGSVSIGGSAFGNSGINWSSAIANQDE
GSNVSNNSVHFAYGTADDSFRLGIVGYGRNNGTNVAPTSSYATSNFGYDVAFTDLYGGAS
AYGDITWRSSTFKRDGSGSFGYGLGSATYVSGKNSPGYVSSHKVNKRQASRGIAT
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagaatggcaagctatttattggtgggatatcttgggataccaatgaagagcgt
cttaaggagtatttcagtagttttggtgaagtggtagaggcgatgatcatgaaggattgg
accacaggacgtactcgaggtttcggtttcattgttttctctgacctagcagttgctgag
aaagtcatcaaggagaaacataatattgatggtagaatggttgaggcaaaaaaagcagtt
cctagggatgaccagaacattatgagtagaagcactagtagcatccaaggtttacctagt
ctatgccgcataagaaagatttttgttggaggtttagcatcaaaagtcacagagagtgac
tttaagaagtattttaatcagtttgggaatgtcacagatgttgtagtgatgtatgatcac
aacactcaaaggcctaggggtttcggattcattacttatgattcagaagaggcagtggac
aaagtgttgctaaaaagtttccatgaacttaatggtaaaatggtcgaggttaaacgagca
gtagctaaagaattattgcctggcccttgtcgtagtcccctcagtggatataactatggt
ctgaatagcgtcaacaactttcttagtggctgcactcagggatatactccaagcaatatt
cgaagctttggacttaggatggatggtagatttactacagttcctggtggtcgaagtggt
tttcctccttttggttctggttatggaatgggcatgaactttgagcctgggttaaaccca
agttttggaaatagtgcaaattttagtagtaatatgaaccatggacggggattgaatcct
tactatattggtaatgtaaatagatttggtagccctattgggtatgatggaagtactgaa
ggtaatacttccttttttagttcagtgactcaaaacctttggggaaatgggggactcaat
tataacacaaatgcttctagttccaatgcatatataggatctggaagcgttagtatagga
ggaagcgcctttggaaatagtggaattaattggagttctgcaattgccaatcaagacgag
gggagtaatgtttctaacaatagtgtgcatttcgcttatggaactgctgatgacagcttt
aggttagggattgtagggtatgggagaaataatgggaccaatgtggcgccaacatcatca
tatgcaacatcaaattttggttatgatgtagcctttacagacctttatggtggtgcttca
gcttatggggatataacttggcgatcatcaacatttaagcgagatggttctggttccttt
ggctatggacttggtagtgccacttatgtttcaggcaaaaattctcccggctatgtcagt
agtcataaagttaataagagacaagcaagtagaggaatcgctacctag
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