Gossypium hirsutum (upland cotton): 107957111
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Entry
107957111 CDS
T04793
Name
(RefSeq) autophagy-related protein 18b isoform X1
KO
K17908
autophagy-related protein 18
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
107957111
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107957111
03029 Mitochondrial biogenesis [BR:
ghi03029
]
107957111
Membrane trafficking [BR:
ghi04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
107957111
Mitochondrial biogenesis [BR:
ghi03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
107957111
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40_WDHD1_1st
WD40
Beta-prop_Vps41
Beta-prop_EML_2
WD40_Prp19
Beta-prop_WDR90_POC16_2nd
WD40_CDC20-Fz
WD40_MABP1-WDR62_1st
Beta-prop_RSE1_2nd
WDR55
BCAS3_WD40
WDR90_beta-prop_4th
Beta-prop_TEP1_2nd
WDR54
EIF3I
DUF2415
Beta-prop_IFT140_1st
Beta-prop_HPS5
Motif
Other DBs
NCBI-GeneID:
107957111
NCBI-ProteinID:
XP_016748037
UniProt:
A0A1U8PA01
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Position
A05:complement(95203630..95211229)
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AA seq
378 aa
AA seq
DB search
MANQSSPYPILCASFNQDNSGFAISTKDGFKIIDSNTGRLCYDRAVGAFIIVEMLYSSSL
LAIVGAGEQPSLSPRRLCFFNTTTGAPLREMNFLTSILAVRLNRKRLVVVLQEKTYIYDS
NSLSMLDTIDTVPNLKGLCAFSPSLEGCFLALPASTAKGAVLVYNVMELQLHCEIDAHRS
PLAAIALSSNGKYIATASEQGTIIRIHLVSEATKSYSFRRGTCSSTIFSLSFAPSLQLPD
ILVATSSSGSVHIFSLGFETNQRTKKSGSFLGSILPYSVNDALDPAHHHVLHNAVSAGVR
SYAVVRKVDNVADSSSSEIASCRNMPSLSTARTSLHGAWSVNSTLWQSFQVMQKPHDTFN
GRTSIKRSCCNTLLDVLN
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atggccaatcagtcctctccttacccaatcctctgcgcttccttcaatcaagacaacagt
ggttttgcaataagcactaaagatggcttcaaaattatcgattcaaacaccggaaggctc
tgctacgatcgtgctgttggagcttttattattgttgaaatgctgtatagttcaagtctt
ctcgccattgtcggagccggtgaacagccatctttatctccacgccgtctctgttttttc
aatacaacaactggtgctcctctccgagaaatgaatttcctgacttcaattcttgctgtt
cgcttaaataggaaaaggcttgttgtggttttgcaagagaaaacatacatatatgactca
aacagtctttcaatgttggataccattgatactgtgccaaatttaaaaggactttgtgca
ttctcccctagtttggagggttgcttcttggctcttcctgccagcacggccaaaggagct
gtattagtgtacaatgtcatggagcttcagttgcattgtgagatagatgctcaccggtct
cctttggctgcaattgcattatcttccaatgggaaatacattgcaacagcatctgaacag
ggaactataatcagaattcatttggtttcagaagcaactaagtcatacagtttccggagg
ggaacatgctcgtcaaccatattttcattgtcatttgcaccatcattgcaacttccagat
attcttgtggccacaagctcttctggttctgttcatatcttctctctggggtttgagaca
aatcagaggaccaaaaagtcaggtagttttcttggatcaatattaccttattctgtgaat
gatgcactagatccagctcaccatcatgtgcttcacaatgctgtttctgcgggagtcaga
agctatgcagtggtacggaaggtagacaacgttgctgattcatcctcatctgagattgca
tcttgtaggaatatgccttcactctcaacagccagaacgagtctacatggagcctggagc
gtgaattcaaccttgtggcagtcatttcaggtaatgcagaaacctcatgacacctttaat
ggtcgaacctcaatcaaaaggagttgttgtaatactttgcttgatgtgttaaattaa
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integrated database retrieval system
