Gossypium hirsutum (upland cotton): 107957331
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Entry
107957331 CDS
T04793
Name
(RefSeq) probable pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107957331
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107957331
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
107957331
NCBI-ProteinID:
XP_016748325
UniProt:
A0A1U8PAZ8
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Position
A05:62152271..62158589
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AA seq
427 aa
AA seq
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MAVPMQWAFSSLALLFLFRVGGSIATNTTSRLGDIDPLNEHAVADPEAVALEVETIIDLN
IRNLTERRKLGFFSCGTGNPIDDCWRCDPNWHKRRKRLAECGIGFGRNAVGGRDGRFYVV
TDHTDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVIKLKQELIMNSFKTIDGRGANVHIA
NGGCITIQFVTNVIIHGLHIHDCKPTGNAMVRNSPSHFGWRTMADGDAISIFGSSHIWVD
HNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGK
GLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPMNPFAKEVTKRVE
TAESKWKNWNWRSEGDLLVNGAYFTPSGAGASASYARASSLGAKSSSMVRGMTLNAGSLP
CRRGRQC
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcctatgcaatgggctttctcttctttagctcttctctttttgtttcgtgtt
ggaggatcaattgccaccaacaccacctccaggttaggagacattgatccattgaacgag
catgcggtggctgacccagaggctgttgctctggaggtcgagaccatcattgacttgaat
attcgcaatttgaccgaaaggaggaagttggggttcttttcatgtggaaccggtaacccc
attgacgattgctggcgttgtgaccctaactggcataagcgccgaaagagactagctgag
tgtggcattggctttggaaggaatgcagttggtgggcgtgatgggcgcttctatgtcgtc
actgaccacactgatgatgaccctgttaaccccaaacctgggacattgcgtcatgctgtg
atccaggaccgccctctctggatcgtgtttaagagggacatggtcattaagttgaagcag
gagctgataatgaacagctttaagactattgacggtcgtggagctaatgttcatattgct
aatggagggtgtataacaatccaatttgttaccaatgtgattattcatggtcttcatatc
catgactgtaagcctactggtaatgctatggtgagaaactcaccgtctcactttgggtgg
aggacaatggctgatggtgatgcaatctccatctttggttctagccatatttgggttgat
cacaattctctctctaattgtgctgatggtcttgttgatgctgtcatgggctcgacagcc
attaccatctcaaataaccacttcacccaccataatgaggtgatgttgctaggtcacagt
gactcttacacaagggataagcagatgcaagtgactattgcctataaccatttcggaaag
ggacttatccaaagaatgccaaggtgtagacatgggtatttccatgtggtgaacaatgac
tacactcactgggaaatgtatgcaattggtggaagtgcaaatcctaccatcaacagtcaa
ggtaacagatacgcagctccaatgaacccatttgcaaaggaggtcaccaagagagtggag
actgccgaaagtaagtggaagaactggaattggaggtcagaaggtgacctgttggtcaat
ggtgcctacttcactccatcaggtgctggagcctcagccagctatgccagggcctcaagc
ttaggtgccaagtcgtcttccatggttagaggcatgactttaaatgctggctcacttcct
tgccgtagaggcagacaatgctag
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