Gossypium hirsutum (upland cotton): 107957709
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Entry
107957709 CDS
T04793
Name
(RefSeq) F-box protein SKP2A isoform X1
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107957709
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107957709
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
107957709
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GFIT
Motif
Pfam:
LRR_6
LRR_4
LRR_At5g56370
F-box-like
F-box
LRR_Zer-1
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
107957709
NCBI-ProteinID:
XP_016748757
UniProt:
A0A1U8PC34
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Position
A05:25226194..25230617
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AA seq
372 aa
AA seq
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MISKAKVGSEELNSSFEKLLMVAAGNSGVRVRMEGAVITDWKDIPMELLLRIVSLVDDRT
AIVASGVCCGWRDAICFGLTQLSLSWCKKNMNNLVLSLAPKFTRLQTLILRQENPQLEDN
AVEAIANFCHDIQELDLSKSFKLSDHSLYALARGCPNITKLNISGCTSFSDGALEYLTNF
CQKLKILNLCGCVKAATDRALQAIGRNCKRLQSLNLGWCDNVGDIGVMSLAYGCPDLKCL
DLCGCVRITDDSVIALADKCLHLRSLDLYYCRNITDRAMYSLAHSRVNNKPSLWQSMKGR
YDEEGLRSLNISQCTALTPSAVQTLCDTFPALHTCSGRHTLVMSGCLSLTSVHCACAVQA
HRTLNTIPHTAH
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgataagcaaagcaaaggtgggaagtgaagagttgaactcgagctttgagaagctgctg
atggttgctgctggaaatagtggcgtgcgagttaggatggagggagcggtgatcaccgac
tggaaagatattccaatggagctgctgttgagaattgtgtctcttgtcgatgatcggact
gctattgttgcttccggtgtttgttgtgggtggagggatgctatttgcttcggcctcaca
caactcagtctctcatggtgcaaaaagaacatgaacaacttggttctatctcttgctcct
aaattcaccagattgcaaactctaatactgcgtcaagagaatccgcagcttgaggacaat
gctgttgaggctattgcaaacttttgtcatgatatacaggagctggacctaagtaaaagt
ttcaagcttagtgatcactctttgtatgcattggcccgtggttgtcctaacattacgaag
cttaatatcagtggctgcacatctttcagtgatggagctcttgaatatttgactaacttt
tgtcaaaaactaaaaatattaaatctctgtggatgtgttaaagctgcaactgaccgtgcg
ttgcaggctattggacgaaactgcaaaaggttgcaatctttaaatctgggatggtgtgat
aatgttggtgatataggagtgatgagtctagcttatggatgccctgatctcaaatgcctg
gacttgtgcggctgtgttcgcataacagatgatagtgtcattgcgttggcagataagtgc
ctccatttaaggtcactcgatctgtactattgtcgaaatatcacagacagggcgatgtac
tcgctggctcacagccgagtgaataacaagccttcgttgtggcagtccatgaagggtaga
tatgatgaggaaggtcttagaagtctgaatataagccagtgtactgcactgactccttca
gccgtacagacattatgcgatacgtttccagcccttcacacttgctccggaaggcatacc
cttgtcatgagtggctgcttgagcttaacatcagtgcattgtgcttgtgcggtccaagct
catcggacactcaacactattccccatactgctcattga
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