Gossypium hirsutum (upland cotton): 107957804
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Entry
107957804 CDS
T04793
Name
(RefSeq) protein ALTERED SEED GERMINATION 2-like
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107957804
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
107957804
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_WDR35_TULP_N
ANAPC4_WD40
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
ANAPC3
WDR90_beta-prop_4th
TPR_1
Beta-prop_IFT140_1st
TPR_2
TPR_14
Motif
Other DBs
NCBI-GeneID:
107957804
NCBI-ProteinID:
XP_016748865
UniProt:
A0A1U8PCK7
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Position
A05:22395407..22406038
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AA seq
758 aa
AA seq
DB search
MEQWPFHDGNVHNLLENRRIDIGHDVGRSLQMHSSLIRRLSMEQELEGHQGCVNAVAWNS
NGSLLISGSDDALINIWSYSGRNLLHSIETGHSANIFCTKFIPETSDELVASGAGDAEVR
LFNLSRLNGRGFNDGAITPSALYQCHTRRVKKLAVEVGNPNMVWSASEDGTLRQHDFREG
TSCPPAGSSHQECRNVLLDLRYGAKRSLADPPRLTLALKSCDISSTRPHLLLVGGNDAFA
RLYDRRMLPPLTSCRKRMLPPTCVNYFCPMHLSDRGRSSLHLTHVTFSPNGEEVLLSYSG
EHVYLMDVNHASGSSMQYTSGDASKLMTFTPVLNKLEHRPPLSGVFQNGLWSRGKTTAGI
EKCRMLVEIAKRSLDNRTNIFHAIEACNEVLDGHGIDIGPTLRLECFCTRAALWLKRKWK
NDAHMAIRDCHNARRIDSSSFRAHYCMAEALEQLGKHKEALDFAVAAQCLSPYDTMAAEK
VENIKKHLAAAEAEKSNKASDGSHKGEPRTGRVLSLSDILYRSEANSDALQDGPRSERED
SDFDEELELDFETSISGDEGRDVESNILHGSLNLRIQRRGDSTRETGACGSPSSSSQNGV
AYQPEAVVDMKRRYAGHCNVGTDIKQASFLGQRGEFVASGSDDGRWFIWEKQTGKLIKML
LGDDAVVNCVQSHPFDCFVATSGIDNTIKLWTPTAAVPSMVAGGSAGPEAANVLEAMESN
QQKLCRNREAFLPFELLERFRMHDFSEGSLQPFECAQT
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggagcagtggccgttccacgacggcaacgtgcacaatctactcgagaacaggcgcatc
gacattggccacgatgttggtcgtagtttgcagatgcattcgtctctgattcgtaggctt
tcaatggaacaagaattggagggacatcagggctgtgtaaatgctgtggcttggaattca
aatggttcacttttgatttctggttctgatgatgcactgataaatatttggagctactct
ggtcgaaaccttttgcattctatagagactggtcattctgctaacatattctgtacaaaa
ttcattcctgaaacttctgatgagcttgtagcctctggagctggagatgcagaggttcga
ttatttaacttgtcccgcttaaatggccgaggtttcaatgatggtgctattactccatca
gcactctatcagtgtcacacaagaagagttaaaaaattggcggttgaagttggaaacccc
aatatggtatggagtgcaagtgaggatggaactctgagacagcatgactttcgagagggc
acttcttgtcctccagctggatcttctcaccaagaatgtcgcaatgttctacttgactta
cgttatggggcaaagaggtcactagctgatcctcctagacttactctggccttgaaatca
tgtgatatcagttctactagacctcatttactccttgttggtgggaatgatgcatttgct
cggctatatgatagaaggatgctgccaccattgacctcctgccggaaaagaatgttacca
cctacttgtgttaattatttctgcccaatgcatctctctgaccgtggacgttcaagtttg
cacttaactcatgttaccttcagccctaatggagaagaggttcttcttagctatagtggg
gaacatgtatatctaatggacgtaaatcatgctagtgggagttcaatgcaatatacctca
ggagatgcttcaaaattgatgaccttcactcctgtactaaataaactagagcaccgacca
cctctttccggtgtcttccaaaatggtctctggagtagaggcaaaactactgctggaatt
gaaaaatgcaggatgttggttgaaattgctaagagatcattagacaacaggacaaatatt
tttcatgcaattgaggcatgcaatgaagtcttggatggacatggtattgatattgggccc
acactcaggcttgaatgcttttgtacacgtgctgccttgtggcttaagcggaagtggaaa
aatgatgcccatatggccattagagattgccataatgctcgaagaatagacagttcttcc
tttagagctcattattgtatggcggaggctttagaacagttgggaaaacataaagaagca
ttagactttgctgttgcagcacaatgtttatctccatatgatactatggccgctgagaaa
gtggagaacattaaaaaacatcttgctgctgctgaggctgaaaaaagtaacaaggcaagt
gatggatcacataagggtgaacctcgaactggaagggtattgtcattgagtgacatacta
tatcgctcagaagctaacagtgatgctttacaagatggtccaagatctgaaagagaagac
tctgattttgatgaggagctggaattagattttgaaacttcaatatcaggtgatgaaggg
cgtgatgttgaatccaacatattacatggaagtttaaatcttagaattcaacgaagaggt
gattcaactagagaaactggtgcatgtggatctccttcctcgtcatcacaaaatggagtg
gcttaccagcccgaggcagtagttgatatgaagcggagatatgctgggcactgcaatgtt
ggaactgacatcaagcaggcgagtttccttggtcagagaggtgaatttgttgctagcggc
agtgatgacggaaggtggtttatttgggagaagcagactggtaaattgataaaaatgctt
cttggagatgacgctgttgtaaactgtgttcagagccatccatttgattgctttgtggca
actagtggtattgacaacacaataaagttatggactccaactgctgctgtcccatcaatg
gttgctggtgggtcagcagggccagaagctgcgaatgtgttagaagcaatggaaagtaat
caacagaaattatgtcgtaatcgtgaagctttcttgccctttgaacttttggagcgattt
cggatgcatgacttttctgaaggatccttgcaaccttttgagtgtgcacagacctag
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