Gossypium hirsutum (upland cotton): 107957837
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Entry
107957837 CDS
T04793
Name
(RefSeq) probable rhamnogalacturonate lyase B
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
107957837
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
107957837
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
EMC7_beta-sandw
CarboxypepD_reg
CarbopepD_reg_2
EAD10
Motif
Other DBs
NCBI-GeneID:
107957837
NCBI-ProteinID:
XP_016748915
UniProt:
A0A1U8PCQ6
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Position
A05:22012929..22017858
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AA seq
639 aa
AA seq
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MSSPGVQLYIQDHYVVMDNGIIQVTISSPDGIVTGIQYNGIDNLLEVEDEEVHRGYWDLV
WSKTGSTGTTGTFDVFKGTSFKVVVETEDQVEVSFTRTWDISLEGGVVPLNLDKRFIMLR
NSPGFYSYAVFEHLEEWPPFNLPQVRIVFKLRKDKFHYMAVADNRQRFMPLPEDRLLDRG
QPLATPEAVLLVNPVEPEFKGEVDDKYQYSSENKDLKVHGWISLNPPVGFWQITPSSEFR
SGGPIKQNLTSHVGPYCLAMFLSAHYAGEDLVLKLNPGEPWKKVFGPVFLYLNSVSSEDN
AFSLWEDAKNQMRRETQNWPYSFPASEDFPKPDQRGKVCGRLEVQDRYISYEPIPANGAY
IGLAPLGDVGSWQRECKGYQFWTKADEDGNFTIDNIRTGEYNIYAWVPGFIGDYKYDVVV
NITEGCDINMGDLIYEPLRNGPTLWEIGIPDRTAAEFYIPDPDLKYINKLYVNHPDRYRQ
YGLWERYADLYPDGDLVFTVGISDYKNDWFFAQVNRKKEDGTYEGTTWQIKFMLRDVDHT
GTYTLRLALATAHLAELQVRVNDPKSDPPLFTTGEIGHDNTIARHGIHGLYRLYNIDVAG
VELVEGENIIFLTQAMNTDPLQGIMYDYIRLECPPSTSS
NT seq
1920 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaccaggggtgcagctgtatattcaagatcactacgtggtgatggataatgga
ataatacaagtgacgatatcgagtcctgatggaattgtcaccgggatacagtataatggc
atcgacaacttgcttgaagttgaggatgaggaagttcatagagggtattgggatctcgtt
tggagtaaaacaggaagtacagggacaacaggaacattcgatgtgtttaaaggaacaagt
tttaaggttgtagtagaaaccgaggatcaagttgaggtctcattcactagaacgtgggat
atctctctcgagggcggtgttgtgcctttgaatttagacaaacggttcataatgcttcga
aattcgccgggattctactcgtacgcagttttcgaacacttagaggaatggcctccgttc
aatcttccgcaagtcagaattgtattcaagctcagaaaagacaaatttcattacatggcc
gtagcagacaacaggcaaagattcatgcccctgccggaagaccggttactagacagaggt
caacctctggcaaccccggaagctgtcctgcttgtcaatccggtggagccggagttcaag
ggagaggttgacgacaaataccaatattcatctgagaacaaagatctaaaagttcatggg
tggatatcattgaacccccctgtgggattttggcaaattactcccagcagtgaattcagg
tctggtggacctatcaaacagaacctgacatcccatgttggtccctattgtcttgcaatg
tttctcagtgctcactatgctggagaagatttagtgctgaagctcaatccaggagagcca
tggaaaaaggtttttggaccagttttcttgtatctgaactctgtctcaagtgaagacaat
gccttttccctttgggaagatgctaaaaaccagatgcgaagggaaacccagaactggccc
tacagttttccagcatcagaggattttccaaagccagatcaacggggtaaagtatgcggc
agattagaagttcaagacaggtatattagctatgaacccatcccagcaaatggtgcttat
ataggcttggcaccactgggcgatgtcggctcgtggcaaagagaatgcaagggttatcag
ttctggaccaaagcagatgaagatggcaacttcacaattgacaatataaggactggggaa
tacaatatttatgcatgggtccctggttttattggagattataaatatgatgttgtggtt
aacattacagaaggctgtgacattaacatgggtgatctgatatatgagcctctgagaaac
ggtcctacgttatgggaaataggcatcccggaccgtacggcagccgagttttacattccg
gatcctgatctcaagtacattaataaactttatgtcaaccatcctgacaggtatagacag
tatgggttgtgggaaagatatgctgatctttatccagatggagacttggttttcacagtt
ggaatcagtgactacaaaaatgattggttctttgcccaagttaacaggaagaaagaagat
ggtacatatgaaggaactacatggcagatcaagttcatgctcagagatgttgatcatacc
ggaacttatacattgcggctggccctagcaactgctcatcttgctgaattgcaggttcgg
gtcaacgatccgaaatcagaccctcctctgtttacaactggagaaatcgggcatgacaac
acaattgcaaggcatggaattcatggtctctaccgactttacaacatagatgtggctgga
gttgagcttgttgaaggggaaaatatcatttttctcacacaagcaatgaacactgaccct
cttcaggggatcatgtatgactatataaggcttgaatgtcccccttcaacttccagctaa
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