Gossypium hirsutum (upland cotton): 107957912
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Entry
107957912 CDS
T04793
Name
(RefSeq) WD repeat-containing protein ATCSA-1
KO
K10570
DNA excision repair protein ERCC-8
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03420
Nucleotide excision repair
ghi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107957912
09124 Replication and repair
03420 Nucleotide excision repair
107957912
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107957912
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107957912
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
107957912
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
107957912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_EML_2
Beta-prop_RIG_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
NBCH_WD40
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_SCAP
WDR90_beta-prop_4th
WD_LRWD1
Beta-prop_SPT8
Beta-prop_Nup120_160
Beta-prop_WDR75_1st
WD40_RFWD3
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Beta-prop_RIG_1st
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
107957912
NCBI-ProteinID:
XP_016749024
UniProt:
A0A1U8PFM1
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Position
D05:complement(19045594..19049556)
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AA seq
450 aa
AA seq
DB search
MWKAIGDREMGKIRPNSFSSRIKSNRISNLQLSNSKDIVSSHRGSINSLQVDLTEGRYLL
SGASDASAAVFDIQRATNYEGDGLIAKHKCLFSVDKQHQKGHKYAISSAIWYPVDTGLFV
TGSYDHHIKVWDTNTTQVVMNFKMPGKVYRTAMSTLATSHMLIAAGTEDVQVRLCDISSG
AFAHTLSGHRDGVMTVEWSTSSEWVLITGGCDGAIRFWDIRRAGCFLVLDQSQSQLGQRP
PVLARSAANKVSVSKSLSAGQNLLVKSRVPQKKYANGHGMKQSTIGRMPSKGSARQRLHP
GMLSIQDRATAHYGAITGLKVTDDGMYLLSAGSDSRIKLWDLESGYNTLVNFGKVRLQAS
KAIQLAVSQDSAQVFVPCMAVVKAFDVWSGKMSLTFRGHYESVNCCWFSSQDQELYTGGN
DRQILVWSPSKPITDDTNERQAKDEDSWSD
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgtggaaggctatcggagatagagaaatgggtaaaatccgtccgaattccttttcaagt
cggatcaaatccaatcggatttccaatctccagctctccaatagtaaagacatcgtttct
tctcacagaggctccatcaattcccttcaggtggatttgactgagggaagatatttgcta
tcgggtgcatctgatgcatcggctgctgtttttgatattcaaagagcaactaactatgaa
ggagatggtctgattgccaaacacaaatgtttgttttcggtggataagcaacaccaaaag
ggacataaatatgccatttcatctgccatttggtatcctgttgacacgggactattcgtt
acaggttcttatgatcatcatattaaagtttgggacacgaatacgactcaggtggtgatg
aattttaaaatgcctggaaaggtttataggactgctatgtctacattggcaacatctcat
atgttgattgctgctggaactgaagatgtgcaagttcgcctttgtgatatttcttcaggg
gcatttgctcacactttatctggccaccgtgatggagtaatgactgtggaatggtctaca
tccagtgagtgggtcttgataacaggtggatgtgatggtgcaattcgattttgggacatt
cgacgagctggatgttttcttgttttggatcagtcccagtcacaacttggacagcgtcca
cctgtcttggctcgttcagctgcaaataaggtctcagtctcaaagtcactgtcagctggc
caaaacttattggtaaaatcaagagtaccacaaaagaaatatgccaatgggcatggaatg
aaacagtcaaccattggtcgaatgccatctaagggttctgcaagacaaagactacatccc
gggatgctgtccattcaggatcgtgccactgctcattatggtgccataactggtttaaaa
gtaactgatgatggcatgtaccttctaagtgcaggctctgattctagaataaaattgtgg
gatcttgaatctggctacaatacacttgtaaacttcggaaaggtgcgcctccaagcaagc
aaggcaattcagttagccgtatctcaggattcagctcaagtttttgtcccatgcatggca
gtcgtgaaagcatttgacgtatggtctggtaaaatgtcccttacatttcgaggccactat
gaatctgtcaactgttgttggttcagttcacaggatcaggaactatatacaggtggcaat
gatcgacaaattcttgtctggtctccaagcaaaccgattacggatgacacgaatgaaagg
caggctaaagatgaggatagttggagtgattag
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