Gossypium hirsutum (upland cotton): 107958059
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Entry
107958059 CDS
T04793
Name
(RefSeq) uncharacterized protein LOC107958059 isoform X1
KO
K06100
symplekin
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107958059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107958059
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107958059
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
107958059
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
107958059
U7-dependent histone pre-mRNA processing factors
107958059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
Motif
Other DBs
NCBI-GeneID:
107958059
NCBI-ProteinID:
XP_016749202
UniProt:
A0A1U8PDC6
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All DBs
Position
A01:complement(119318195..119328276)
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AA seq
1337 aa
AA seq
DB search
MVGIMNPVSREKLASLSSSVKFAIDLGSKLELCCQLKHDLLEEDAADLSEFLPRIFDLYS
DPSGPVRKFATEIIGEIGVKHLEFVPEIAPFLITVVEDATPAVARQSIACSIDLFRHTLE
KIAIRGLYSSELDSDLESSWSWMLKLKEKIYSIAFQPGSGGIRLVALKFVEAVILLYTPN
PNGSPEPPPNEGTSIEFNITWLRGGHPLLNVGDLSIEASQRLVLLLDQLRFPAVKSLTTS
VIVVIINSLSAIAKKRPAYYGRILPVLLSLDPPSFVIKGVHVYGAHHALKNALLSCLKCT
HPSAAPWRERILGALKEMKAGGLADLALNQVHKINGSVEEEKDDSLLIKEEKPLTKAYDA
AGSNVGRKRSGTEDSSDLAEKDEVSGKRVKATPSVSEESTKELNTNITVSQGDISSTQSS
TRKVDVDTGPVQQLVGMFGALVAQGEKAVGSLGILISNISADLLAEVVMANMCNLPPTHP
HTDTDDELLEDMCIVGSDTQAKYPPSFLADVISLSSTFPPIASMLNSQQSVPNKVVIQKT
EGEEEVDVVADPNSALAYAGMAHEDENALLATDLPVSSNIVLPGMKIDLPTPSDIHDTGN
LESGIPGLDSSFRNDGLSDTQAASSLVSTDIEDASQEQATSFGGKSPLHVLPSISIDRSE
ELSPKAAVTDSSSMVSSTATSVVTSCPFVLPKMSAPVVNLSEDQKDDVQKLAFVRIVEAY
KQIAVAGGSQVRSSLLAYLGVELPSELELQKVLREHILSDYINHQGHELTLRVLYRLFGK
AEDESDFLSCTTAASAYETFLLAVAETLRDSFPPSDKSLSKLLGEAPRLPKSVLNLLGCL
CSPGISEKAEESQSGDRVTQGLSTVWSLILLRPPIRDVCLKIALQSAVHHLEEVRMKAIR
LVANKLYPLQSIAQQIEKFAREMLLSVVNVDATERTGAEGLISESHKDSDLEKSSNEHPS
MSSSSKDISADVHQSETSHSGSAPSVPEAQRCMSLYFALCTKKHSLFGRIFIIYSSASKE
VKQAIHRHIPILVRTMGLSSDLLEIISDPPSGSENLLMQVLQTLTEGTVPSAELIFTIKK
LFDSKLKDVEILVPVLPFLQGDEVLLLFPHLVNLPLDKFQAALTRLLQGSAHSGPVLTPA
EVLIAIHGIDPERDGIPLKKVTDACNACFEQRHIFTQQVLAKVLNQLVEQIPLPLLFMRT
VLQAIGAFPALVEFIMEILSRLVSKQIWKYPKLWVGFLKCALLTKPQSFSVLLQLPPPQL
ENALNRTAALKAPLVAHASQQNIRNSLPRSVLAVLGLAPDTQSSSQAQTSQAHTGDTSNS
EKDAAVTEKSKESSSAS
NT seq
4014 nt
NT seq
+upstream
nt +downstream
nt
atggtagggatcatgaatccggtttcgagagaaaagctcgcgagtttatccagctcagtg
aagttcgccattgacttaggttccaagctagagctttgttgtcaactaaagcatgattta
ttggaggaagatgctgctgatttgtccgagttccttcctcgtatcttcgacctttactct
gatccgtctggtccggttcgcaagtttgctaccgagattattggtgaaattggagtgaag
caccttgaatttgtacctgaaattgcaccatttctgataactgttgtggaggatgctaca
cctgctgttgctcgacaatctattgcttgcagcattgatttgtttcgccatactctcgaa
aagattgcaattcggggtctttactccagtgaattggacagtgatcttgaatcatcgtgg
tcatggatgttaaagttgaaggagaagatatattctatagctttccagccaggaagtggt
gggataagattggtcgcactgaagtttgttgaagcggttattcttctttatactcctaac
cctaatggctctccggagccccctcctaatgaaggtacctctatagagtttaacataact
tggcttcgggggggccatcctttactcaatgttggggatttgtcaattgaagctagccaa
cgtttggttttgttgcttgatcagcttagatttcctgcggtaaaatctctcaccacctct
gtgattgttgtgattattaacagtctttcagcaattgcaaagaaaaggcctgcatattat
ggacgtattctaccagttttgctcagtttggatcccccaagctttgttatcaaaggggtt
catgtctatggagcacatcatgctttgaaaaatgccttactctcatgcttgaaatgcacg
cacccgagtgctgcaccgtggcgggaacgtatacttggtgccttgaaagagatgaaagct
ggaggactggcagatctagctctcaaccaagttcataaaattaatggaagtgtagaagag
gaaaaagatgattctttgcttattaaggaagaaaagcccttgactaaagcatatgatgct
gctggtagcaatgtggggaggaaaagatctggaaccgaggacagtagtgatttggctgaa
aaagatgaggtgtcaggcaaacgtgtcaaggcaacacctagcgtctcagaagagtcaaca
aaagaattaaacacgaatataactgtgtctcaaggtgatatttcgtcaactcaatctagc
acaagaaaagtagatgttgataccggaccagtccagcaacttgttggcatgttcggtgcc
ttggttgctcaaggagaaaaagctgtgggatctttggggattcttatttcaaacatatct
gctgacttgctggctgaggtagtgatggctaacatgtgtaaccttcctcctacacatcct
cacactgacactgatgatgaattgctggaggatatgtgcatagttggaagtgacactcaa
gccaagtatccaccgtcatttttagctgatgtcatttcactatcaagtactttcccgccg
atagcctcaatgctgaactcccagcaatcagttcccaataaagtagtgatacagaaaaca
gaaggggaggaagaggttgatgttgtggctgaccctaatagtgctcttgcatatgctgga
atggctcacgaagatgaaaatgctctcttggccactgatttacccgtttcgtctaacatt
gttttgcctggaatgaagattgatctacctactccatctgatatccatgatacaggcaat
cttgaaagtggcataccgggtttggattcttcttttcgtaatgatggactgtcagatacc
caagctgcttcctcattagtctctactgatatagaagacgctagtcaagaacaagctaca
agttttggtggaaagtcaccgttgcatgtacttccatcaatttcaatagataggtctgag
gagcttagtccaaaagcagctgttactgattccagcagcatggtttcctcaacagcgact
tctgttgttacatcctgtccttttgtcttgcccaagatgtcagcacctgttgtcaatctt
tccgaggatcagaaggatgatgtgcaaaagttggcttttgtacgaatcgttgaggcatat
aagcaaatagcagtagctggaggctcacaagttcgttcttctctgcttgcttacctgggg
gttgagttgccatcagagttagaactacagaaggttcttcgagaacacattttgtcagat
tatataaatcaccagggacatgagttgacattgcgtgtcctctataggttatttggaaag
gcagaagatgaaagtgatttcctctcatgtacaactgctgcttctgcatacgaaacattc
cttctggctgttgctgaaactcttagggactcttttccgccttcagacaaatctttaagt
aaactacttggcgaggctcctcgcctgcctaagtcagttttgaatttattagggtgtctg
tgttcacctggaatttcagagaaagctgaggagtcacaaagtggagatagagttactcaa
ggcctcagcaccgtatggagcctaattctactgagacctcccattcgagatgtgtgcttg
aaaattgctttgcagagtgctgttcatcacttggaggaagtccgaatgaaagcgatacgc
ctggtagcaaataagttgtaccctttacaatctattgctcaacaaatagaaaaatttgca
agggaaatgctgctctctgtagtaaatgttgatgctacagaaagaacaggtgctgaagga
ttaatcagtgaatcacataaggactctgatttggaaaagtcatcaaatgagcatccgtca
atgagttccagtagtaaagacatctctgctgatgttcatcagtcagaaacatctcatagt
gggtcagccccttctgtccctgaggctcagcggtgcatgtctctgtattttgctctttgt
acaaagaagcactctctttttggccgaatatttattatctacagtagtgcgtcgaaggaa
gttaagcaggcaatccatcgtcatattccaatactagtccgtactatgggcttgtcatct
gaccttcttgaaattatttcagatcctcctagtggaagtgagaatcttctgatgcaggtt
ttgcagacactgacagaagggacagttccttctgcagaattgatatttaccattaagaag
ttatttgattcaaaactgaaggatgttgaaattctagttccagtattgccattcctacaa
ggagatgaggttttgctgcttttcccccatcttgtaaatcttccgctggataagttccaa
gctgcgcttacccgtttgctacagggatctgctcactctggtccagtgctcactccagct
gaagtattaatcgctatccatggcattgatcctgaaagagatggaattcccttgaagaag
gtcactgatgcatgtaatgcttgttttgagcaacggcatatattcactcagcaggttctt
gcgaaggtcttaaatcagttggtcgagcagattcctcttcctttgttgtttatgcgtacc
gtattacaagccattggtgcttttcctgcactggtggaattcataatggagattctttct
cgtcttgtaagcaagcaaatatggaaatacccaaagttgtgggtaggatttttgaaatgt
gcgctcttgacaaagcctcaatctttcagtgtgctgcttcagctacctcctccacaactt
gaaaatgcactgaacaggactgcagcactcaaagctcctttggttgctcatgctagccaa
cagaatatccgaaattcacttcctaggtctgtgttggcagttttgggacttgctccggat
actcagtcctccagtcaggcacaaacaagtcaggctcacaccggagatacaagcaactcc
gagaaggatgctgcagtgacagagaaatcgaaagagtcatccagtgctagctga
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