Gossypium hirsutum (upland cotton): 107958211
Help
Entry
107958211 CDS
T04793
Name
(RefSeq) vacuolar protein sorting-associated protein 35B isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
107958211
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107958211
Membrane trafficking [BR:
ghi04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
107958211
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
FliS
Motif
Other DBs
NCBI-GeneID:
107958211
NCBI-ProteinID:
XP_016749388
UniProt:
A0A1U8PGI0
LinkDB
All DBs
Position
A05:18148054..18155124
Genome browser
AA seq
785 aa
AA seq
DB search
MLLIGAEDEEKWLAEGIAGIQHNAFYLHRALDSNNLRDALKYSAQMLSELRTSKLSPQKY
YELYMRAFDELRILEMFFKDESKHGVSVVDLYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKELLQDLVEMCHGVQHPIRGLFLRSYLAQISRDKLLDIGSDYEGDAETVMDAVEFIL
ENFTEMNKLWVRMQLEGPGRVREKREKERSALQELVGKNLHVLSQIEGVDLEIYKETVLP
RVLEQVVNCKDDLSQYYLMDCIIQVFPDEYHLQTLEMLLAAFPQVQPTVDIKTVLSPLMD
RLSKYAASSADVLTEFLQVEAFTKLSNAIEKVIEMQVDMPAVGAITLYVSLLTFTLRVHP
DRLDYVDQVLGACVKKLSSIPKLEDRWATKQLVALLSAPLEKYNDTVTALTLSNYPRVMD
HLDNGTNKVMAMVIIESIMKNNTCISTADKVEVLFELIKGLIKDLDGATDELDEEDFKDE
QNSVAKLIHMLYNNEPEEMLKIICIVWKHTMAGGPKRLPFTVPSLVFSALRLVRQMQGQE
GDIVGEEVPATPKKIFQLLSQMIEALSAVPSPELALRLYLQCAKAANGCDLEYVAYEFFT
QVFVLYEEEIANSKAQVTAIHLIIGALQRMNVFNVENRDTLTHKTTGYSARLLKKPDQCR
AVYACSHLFWVDGQDGIRDGERVLLCLKRALRIANAAQQMASIARDSSGPLTLFVEILNK
YLYYFEKGNKQITAAAIQHLIELINTEMQSDSATSDAFLASTLRYIQFQKQRGGVMGAKF
ESIKL
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgttgttaatcggagcagaggacgaagagaaatggctggcggaagggatcgctggtatt
cagcacaacgctttttacttgcatcgagctttggattccaataatcttagagatgctctc
aagtactcggctcagatgttatcagagctccggacctccaaactctctcctcaaaaatat
tacgaactttatatgcgagcttttgatgaattgaggatattggagatgttcttcaaagat
gaaagcaaacacggtgtctctgtggttgatctgtatgagctagttcaacatgctggcaat
attttgcctagattgtatctcctatgcacggtaggatctgtctatatcaaatctaaggag
gctcctgccaaggaacttcttcaagatcttgtggaaatgtgtcatggagttcaacatccc
atacgtggactttttttaaggagttaccttgctcaaatcagtcgagacaagttactagat
attggttctgattatgagggagatgctgaaactgtgatggatgctgtggaatttatactg
gaaaatttcactgagatgaataaactttgggtgcgaatgcagctcgagggacctggtaga
gttagagagaagcgggaaaaagaaaggagcgcacttcaagaacttgtaggaaaaaatctc
catgttctcagtcagatagaaggggtggaccttgagatttacaaagaaacagttcttcca
agagtcttagagcaggttgtaaattgcaaagatgatctttcccaatattatttgatggat
tgcataattcaggtgttccctgatgagtatcacttgcagactcttgagatgttattggca
gctttcccccaggtccagccaacagttgacatcaagacagttttgtctccactaatggac
agactgtcaaagtatgctgcttcaagtgctgatgtattaactgaatttctacaagttgaa
gccttcactaaattgagcaatgcaattgagaaggtcatagaaatgcaggtagacatgcct
gctgttggagctataactttgtacgtctctcttcttacctttactcttcgtgttcatcct
gatcggcttgattatgtggatcaagtactgggagcctgtgttaagaagctgtcgagcata
ccaaaacttgaagatagatgggcaacaaaacaattggttgctcttttgagtgctccattg
gagaaatacaatgatacagtaacagccttgacactttctaattatccacgagtaatggac
catcttgataatggaacaaataaagtcatggcaatggttatcattgaaagcattatgaag
aataatacatgcatatcaactgcggacaaggttgaggtgttgtttgaattaataaaggga
ctcattaaggacctggatggtgctacggatgagcttgatgaagaggatttcaaagatgag
caaaattctgttgctaagctaattcacatgctatataataatgaaccggaggaaatgttg
aagattatatgtattgtttggaagcataccatggctgggggaccaaaacgcctacccttt
acagttccttcacttgttttttctgcacttcggttggttaggcaaatgcaaggtcaggag
ggagacatagtgggagaagaagtgccagcaacaccaaagaaaatttttcagctcttgagt
cagatgattgaagcactttcagctgttccatcacctgaacttgctttaaggttgtaccta
caatgtgctaaggcagctaatggctgtgatcttgagtatgttgcttatgaatttttcact
caagtgtttgtattgtacgaagaagaaattgcgaactccaaagcccaagtgactgcaatt
catctgataattggggctctacagaggatgaatgtatttaatgtcgagaaccgagatact
ttgacacacaagaccacaggatattcagctcgactattgaagaagcccgatcagtgcaga
gctgtttacgcatgttcacatcttttttgggttgatggtcaggacggcattagggatggg
gagagggtcctgctgtgcctaaagcgagcattgaggatcgcaaatgctgctcaacagatg
gctagtattgcacgagatagcagtgggccactcacgctctttgttgagatattgaacaag
tacctctattactttgaaaaaggaaataaacaaatcaccgctgctgcgatccaacacctg
atagaattaatcaatacagagatgcagagtgattctgcaacctcagatgctttccttgcc
agtaccttgcgttacattcaattccagaaacaaagaggaggtgtaatgggtgccaaattt
gaatccattaaattgtaa
DBGET
integrated database retrieval system
