Gossypium hirsutum (upland cotton): 107958367
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Entry
107958367 CDS
T04793
Name
(RefSeq) sm-like protein LSM1B
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107958367
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107958367
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107958367
mRNA degradation factors
5'-3' decay
Lsm complex
107958367
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
107958367
NCBI-ProteinID:
XP_016749609
UniProt:
A0A1U8PHD9
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Position
A05:complement(13625385..13628182)
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AA seq
128 aa
AA seq
DB search
MSWAGPEDIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELDLEREELPPHMTHVSVAEIRRAQKAEREATDLKGTMRK
RMEFLDLD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggcaggccctgaagatatctacctttctacttctcttgccagttatcttgac
agaaaacttttagttctgctgcgagatggacggaagctcatgggaacattacgttcattt
gatcaatttgccaatgctgttcttgagggtgcttgtgaaagggttattgttggtgacctt
tattgtgacatccctttaggtctctatgtaatccgtggggaaaatgttgtcttgattggt
gaactggacttggagagagaggaacttcctccgcatatgactcatgtttctgttgcagaa
attagaagggctcagaaagcagaaagggaagcaacagatcttaaaggtacaatgaggaaa
agaatggagttccttgatttggactaa
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