Gossypium hirsutum (upland cotton): 107958446
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Entry
107958446 CDS
T04793
Name
(RefSeq) protein RAE1 isoform X1
KO
K14298
mRNA export factor
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107958446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107958446
03036 Chromosome and associated proteins [BR:
ghi03036
]
107958446
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107958446
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
107958446
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_RIG_2nd
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
ANAPC4_WD40
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_HPS5
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_EIPR1
WD40_RFWD3
Vitelline_membr
RES
Motif
Other DBs
NCBI-GeneID:
107958446
NCBI-ProteinID:
XP_016749708
UniProt:
A0A1U8PHD0
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Position
A05:11684273..11689061
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AA seq
348 aa
AA seq
DB search
MSTFGAAAANHNPNKSFEVAQPPSDSVSSLSFSPKANFLIATSWDNQVRCWEISRNGTAV
ASTPKASITHDQPVLCSTWKDDGMTVFSGGCDKQVKMWPLLSGGQPMTVAMHDAPIKEVA
WIPEMNLLATGSWDKTLKYWDTRQSNPVHTQQLPDRCYALTVKYPLMVVGTADRNLIIFN
LQNPQNEYKRVTSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDDGQQGKNFTFKCHR
DGSEIYSVNSLNFHPIHHTFATAGSDGAFNFWDKDSKQRLKAMSRCSQPIPCSTFNNDGS
IFAYSVCYDWSKGAENHNPSTAKSYIFLHLPQESEVKGKPRVGTSGRK
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgtctacttttggtgccgccgctgccaatcataaccctaataaatcgtttgaggttgct
caaccacccagtgattctgtttcaagccttagcttcagtcccaaggccaatttcttgatt
gctacttcatgggataatcaggtgagatgttgggaaatttcccggaatggtacagctgtt
gctagtacgccaaaggcatcaattactcatgatcagccggttttgtgctcaacctggaag
gatgatgggatgacagtcttttctggaggctgtgacaagcaggtcaaaatgtggccttta
ttatctggtggtcaaccaatgacagttgccatgcatgatgcccctattaaagaagttgct
tggatcccagaaatgaacctgttagctacaggaagctgggacaagacattaaaatattgg
gatacaaggcagtcaaacccagtgcatactcaacaacttcctgatcgctgctatgcactc
acagtgaaatatccattgatggttgttggtaccgcagataggaatctgataatctttaac
ttgcagaatcctcagaatgaatacaagagagtcacctcacccctcaagtatcagacaaga
tgtgttgctgccttccctgaccagcaagggtttttggttggttcaattgagggaagggtt
ggtgtacaccaccttgatgatggacaacagggtaaaaactttacttttaaatgccacagg
gatggcagtgagatatattctgtcaactcattaaacttccatcctatacatcacactttt
gccactgcggggtctgatggtgctttcaatttctgggacaaggatagcaaacagagacta
aaggcaatgtcaaggtgcagtcaacctataccatgcagtactttcaacaatgatggatca
atattcgcatattcggtttgttatgactggagtaagggtgctgaaaatcacaacccatca
acagcaaaatcctacattttcctgcacttgccacaggaatctgaagttaaaggcaagcca
agagttggaacaagtggtagaaagtga
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