Gossypium hirsutum (upland cotton): 107958992
Help
Entry
107958992 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
107958992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107958992
03036 Chromosome and associated proteins [BR:
ghi03036
]
107958992
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
107958992
Coactivators
SAGA/TFTC/STAGA complex
107958992
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
107958992
STAGA complex
107958992
TFTC complex
107958992
SAGA complex
107958992
SLIK complex
107958992
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_IFT122_1st
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_EIPR1
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
DUF5659
WD40_like
LisH
Motif
Other DBs
NCBI-GeneID:
107958992
NCBI-ProteinID:
XP_016750426
UniProt:
A0A1U8PGT6
LinkDB
All DBs
Position
A05:complement(5775819..5780970)
Genome browser
AA seq
669 aa
AA seq
DB search
MENMQAVNSFVAAYLKKKGFKEAEQLLEDIQSKDSAPVDFHNDPELAKFIHRFSQSEDDV
ARYQDGYSKLRSWAYGSLDLYKHELLRVLYPVFIHSFMDMVAKGHLQEARTFFKAFREDH
ELMHSRDLQKLEGVLSQSHLEEMEFSRSLRQSKVNIKICQYSYDLLLQYLHKTQSIAMLG
VINEHINFQVFSGQPSSISDDAEVVTLIGSCQDAANQLNQKEIHWGLLEDSLEERLEKAG
GLLSDYEKTEEENKEGDVDETKKRSIEGGKQGASTKESKKEKALNATTKNARLEASTTSA
APRVKPKLPLPLMSTEVEQSILEDLRNCVQLSSVALPSVSFYTFLNTHNGLNCSSISHDG
SLVAGGFSDSSLKVWDMAKLGQQGGSSNLQVENDSSXSEQVLGPNGGKRSYTLFEGHSAP
VYSATFSPLGDFILSSSVDTTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASH
DRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRIF
IGHRSMILSLAMSPDGRYMASGDEDGMIMTWDLSSGRCITPLMGHTSCVWTLGFSCEGSL
LASGSADCTIKLWDVTTSTKVPRNEEKSGTNPNRLRSLKTLATKSTSVYSLQFSRRNLLF
AAVVLSKNT
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatatgcaagcagtgaatagcttcgtagcagcttatttgaagaagaaaggattt
aaagaagcggagcaattgttagaggatattcaaagcaaggactccgctcctgtcgatttc
cacaacgaccctgaactagctaagttcattcaccgcttctcccaatcggaggatgatgtg
gcacggtaccaggatgggtatagcaagctgaggtcatgggcttatggttcgcttgattta
tataagcatgaattgcttcgcgtgctttatcctgtctttatacattcgttcatggatatg
gtggcaaaaggacatctacaagaggctagaactttctttaaggcctttcgtgaagaccat
gaactgatgcactcacgtgatcttcaaaagttggaaggggttctttctcagtctcattta
gaggaaatggaattttctcgttctcttaggcagagtaaagtcaacatcaagatatgtcag
tattcctatgaccttctgttgcaatatttgcataaaacacagtcgattgcaatgcttggg
gtcatcaacgagcacatcaactttcaagttttttctggacagcccagttccatttctgat
gatgcagaggttgtaacacttattgggagctgccaggatgcagctaatcagttaaaccag
aaagaaatacactggggattgctcgaagactccttagaagaacgcttggagaaggccgga
ggtttgctttctgattatgaaaagacagaagaagagaacaaagagggggatgtagatgag
actaagaaaagatcaattgaaggtggaaagcaaggtgcttcaacaaaagagtcaaaaaag
gagaaagctcttaatgcaacaacaaaaaatgctcgtctagaggctagcacgacctcagca
gcaccacgagtgaaaccaaagctccctttgcccttaatgtcaactgaggtagagcagtct
attcttgaggatttaagaaactgtgtacaattgagtagtgttgcactaccatcagtcagc
ttttatactttcctcaacacgcataatggtttgaattgttcatcaatatcccatgatgga
tctttggttgctggggggttctcagactcgtcactgaaggtttgggatatggcaaagctg
ggccaacaaggtggaagttctaatctgcaggttgaaaatgattcttcttaaagtgaacag
gttctggggccaaatggtgggaaaaggtcctatacattgtttgagggtcactcagcacca
gtttattcagccacctttagtcctcttggtgattttattctttcttcttcagtagataca
acaattcgcttatggagcacaaaactaaatgcaaatcttgtttgctacaagggtcataat
tatcctgtatgggatgttcagtttagtcctgtaggtcactattttgccagcgcttctcat
gatcgaacagcaaggatttggtcgatggacagaatacaacctctgagaataatggcaggg
cacttgtctgatgttgattgtgtgcaatggcatgccaactgcaactatattgccactggc
tctagtgataaaacagttagattgtgggatgtacaaagtggagaatgtgttcggattttc
attggtcatagaagtatgatattgtcattagcaatgtcccctgacggtcgatatatggca
tctggtgatgaagatgggatgataatgacgtgggacctttcaagtggacggtgcattaca
cctttgatgggtcacacctcttgtgtatggacacttggtttcagttgtgaaggctcactt
ctggcatctggatctgcggattgcaccataaaattgtgggatgtaacaacaagcacaaag
gtcccaaggaatgaagaaaagagtgggacgaatccaaacaggctgagatcattgaaaacc
cttgcaaccaagtctacttctgtgtatagtttacagttttctagaaggaacctgctattt
gcagctgtggtgctctctaagaacacgtaa
DBGET
integrated database retrieval system
